PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00123280001

Common Name

GSBRNA2T00123280001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 353aa MW: 39494.6 Da PI: 6.5112

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00123280001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.5e-11	139	196	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se GSBRNA2T00123280001 139 KRAKRIMANRQSAARSKERKARYIMELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 196 9*****************************************9999887776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-16	135	199	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	137	200	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-9	139	194	No hit	No description
SuperFamily	SSF57959	1.38E-10	139	190	No hit	No description
Pfam	PF00170	1.7E-9	139	197	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.27E-23	140	189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDDPSNTTKP NQCPPPLSTP PPTSTPFRGP YHRRAHSEVQ FRLPEDLDLS EPFGGFEDLG 60 SEDDLFCSYM DIEKLGSGSD SAGPSAPRSD NPFPEAGDSR PRHRHSLSVD GGSSTLESIE 120 AKKAMAPDKL AELWVVDPKR AKRIMANRQS AARSKERKAR YIMELERKVQ TLQTEATTLS 180 AQLSLFQRDT TGLSSENTEL KLRLQVMEQQ AKLRDALNDQ LKKEVERLKF ATGEVSHADA 240 YNLQMSHMQY SQQPQQPSFF QHHHQQQQQQ TDAQNLQQMT HQFHLFQPNN NQNQNPQLMH 300 HATSNASGQS HSFAEAMHED HLGRLQGLDI SSCGRGSNFG RSDTVSESSS TM*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDDPSNTTKP NQCPPPLSTP PPTSTPFRGP YHRRAHSEVQ FRLPEDLDLS EPFGGFEDLG  60
SEDDLFCSYM DIEKLGSGSD SAGPSAPRSD NPFPEAGDSR PRHRHSLSVD GGSSTLESIE  120
AKKAMAPDKL AELWVVDPKR AKRIMANRQS AARSKERKAR YIMELERKVQ TLQTEATTLS  180
AQLSLFQRDT TGLSSENTEL KLRLQVMEQQ AKLRDALNDQ LKKEVERLKF ATGEVSHADA  240
YNLQMSHMQY SQQPQQPSFF QHHHQQQQQQ TDAQNLQQMT HQFHLFQPNN NQNQNPQLMH  300
HATSNASGQS HSFAEAMHED HLGRLQGLDI SSCGRGSNFG RSDTVSESSS TM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00123280001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074269	1e-176	AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	AY096746	1e-176	AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	Z86093	1e-176	Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634112.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	0.0	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0D3C5G7	0.0	A0A0D3C5G7_BRAOL; Uncharacterized protein
STRING	Bo4g190320.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-170	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]