PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_15600_BGI-A2_v1.0 | ||||||||
Common Name | F383_15530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 369aa MW: 39858.3 Da PI: 5.8861 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.3 | 1.2e-11 | 168 | 226 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + v l++e+ Cotton_A_15600_BGI-A2_v1.0 168 KRAKRIMANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDVTGLTTEN 226 9******************************************9999988888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.1E-17 | 164 | 228 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.783 | 166 | 229 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.1E-10 | 168 | 223 | No hit | No description |
SuperFamily | SSF57959 | 1.05E-10 | 168 | 220 | No hit | No description |
Pfam | PF00170 | 8.3E-10 | 168 | 226 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 5.18E-25 | 169 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MQYPPLLNPN PLPPIPSKPN ASSTTQTALF FPNSTPFCGS HHRRAHSEVQ FRIPDELDLG 60 SDTFEGLGSE DDVFYNYVDI EKLGGSSKGP DEGGGSGSGI SGSSSGGSGQ NQKGEEINGG 120 SGKGEKNDGK GRHRYSNSVD GCSTMELIEA KKAMPPDKLA ELWNIDPKRA KRIMANRQSA 180 ARSKERKARY ITELERKVQT LQTEATTLSA QLTLFQRDVT GLTTENTELK LRLQAMDQQA 240 RLCDALNEAL KKEVEGLKIA TGEATTPTNT FNLGMHHIPY TQSSFLPPQP QHMQIDTLNV 300 QMPPFQPLQS NTLTTNPSMV GATNSYAFAD MMQQDPLGQL QGLDISSGGS HSVKSEGPSI 360 STSESSGTL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643965.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | O22873 | 1e-104 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A0B0N5A8 | 0.0 | A0A0B0N5A8_GOSAR; Transcription factor RF2b | ||||
STRING | Gorai.010G218700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4042 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 8e-96 | bZIP family protein |
Publications ? help Back to Top | |||
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