PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM3289
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Subtree rooted at node 110: /----- GSBRNA2T00035264001 [Brassica napus] (2) /-97-+ | \----- XP_013606232.1 [Brassica oleracea] (19) /-100+ | | /----- XP_009121545.1 [Brassica rapa] (6) | \-73-+ /--99-+ \----- GSBRNA2T00135493001 [Brassica napus] (35) | | | \--------------- RrC5251_p1 [Raphanus raphanistrum] (46) | | /----- RrC646_p5 [Raphanus raphanistrum] (8) /-82-+ /-100+ | | | \----- Rsa1.0_01814.1_g00002.1 [Raphanus sativus] (10) | | | | | |---------- XP_013625167.1 [Brassica oleracea] (24) | | | | \----100---+---------- XP_009131500.1 [Brassica rapa] (25) | | | |---------- GSBRNA2T00130071001 [Brassica napus] (34) /------------62-----------+ | | | \---------- GSBRNA2T00140505001 [Brassica napus] (58) | | | |-------------------------- 676789282 [Sisymbrium irio] (15) | | | |-------------------------- Tp6g28320 [Thellungiella parvula] (18) | | | \-------------------------- Thhalv10014493m [Eutrema salsugineum] (61) | | /----- Thecc1EG014337t1 [Theobroma cacao] (3) | | | /-70-+----- Ciclev10021357m [Citrus clementina] (21) | | | | /-100+ \----- evm.model.supercontig_3.196 [Carica papaya] (28) | | | | | \---------- Eucgr.K02546.1.p [Eucalyptus grandis] (63) | | | /--53-+ /----- Ciclev10012593m [Citrus clementina] (40) | | | /-100+ | | | | \----- orange1.1g026143m [Citrus sinensis] (50) | | \-100+ | /-66-+ \---------- Neem_4533_f_2 [Azadirachta indica] (56) | | | | | |--------------------- Eucgr.I02058.1.p [Eucalyptus grandis] (11) | | | | | \--------------------- evm.model.supercontig_14.222 [Carica papaya] (64) | | | /-100+ /----- Gh_D07G1814 [Gossypium hirsutum] (12) | | | /-100+ | | | | \----- Gorai.001G207300.1 [Gossypium raimondii] (65) | | | /-100+ | | | | | /----- Gh_A07G1615 [Gossypium hirsutum] (27) | | | | \-92-+ | /---100---+ \----100---+ \----- Cotton_A_25835_BGI-A2_v1.0 [Gossypium arboreum] (33) | | | | | | | \--------------- Thecc1EG018979t1 [Theobroma cacao] (49) /-100+ | | | | | | /----- XP_010549963.1 [Tarenaya hassleriana] (30) | | | \------------61-----------+ | | | \----- XP_010558530.1 [Tarenaya hassleriana] (39) | | | | | | /----- Csa15g001870.1 [Camelina sativa] (4) | | | /-99-+ | | | | \----- Csa01g001860.1 [Camelina sativa] (14) | | | /-93-+ | | | | \---------- Csa19g002950.1 [Camelina sativa] (60) | | | /--84-+ | | | | | /----- Cagra.1194s0071.1.p [Capsella grandiflora] (37) | | | | \----95---+ | | | | \----- Carubv10014470m [Capsella rubella] (42) | | | | | | | /-59-+--------------------- KFK37664.1 [Arabis alpina] (16) | | | | | | | | | | /----- 896196 [Arabidopsis lyrata] (22) | | | | | /-86-+ | | /-100+ /-74-+ | | \----- Araha.2210s0014.1.p [Arabidopsis halleri] (47) | | | | | | \----68----+ | | | | | | \---------- AT3G02310.1 [Arabidopsis thaliana] (51) | | | | | | | | | | | \-------------------------- Bostr.1460s0147.1.p [Boechera stricta] (52) | | | | | | | | | | /----- Rsa1.0_00636.1_g00016.1 [Raphanus sativus] (5) | | | | | /-99-+ | | | | | | \----- RrC13197_p1 [Raphanus raphanistrum] (53) /-97-+ | | | | | | | | | | | | /----- XP_009117898.1 [Brassica rapa] (17) | | | | | | /----99----+-100+ | | | | | /-100+ | | \----- GSBRNA2T00057239001 [Brassica napus] (59) | | | | | | | | | | | | | | | | | \---------- XP_013639591.1 [Brassica oleracea] (48) | | | | | | | | | | | | | | | /-69-+ /---------- Rsa1.0_00078.1_g00024.1 [Raphanus sativus] (7) | | \-100-+ | | | | | | | | | | | | | | /-100+ /----- GSBRNA2T00022303001 [Brassica napus] (9) | | | | | | | | | \-86-+ | | | | | | | | | \----- XP_009147359.1 [Brassica rapa] (13) | | | | | | | \-100-+ | | | \-100+ | | | /----- XP_013584599.1 [Brassica oleracea] (36) | | | | \-59-+ \---100---+ --50-+ | | | | \----- GSBRNA2T00076267001 [Brassica napus] (38) | | | | | | | | | | /----- Tp3g01370 [Thellungiella parvula] (26) | | | | |---------91---------+ | | | | | \----- 676730970 [Sisymbrium irio] (62) | | | | | | | | | \-------------------------- Thhalv10021390m [Eutrema salsugineum] (44) | | | | | | | \------------------------------------ AA10G00376 [Aethionema arabicum] (45) | | | | | \---------------------------------------------- AA40G00520 [Aethionema arabicum] (57) | | | \--------------------------------------------------------- KFK25803.1 [Arabis alpina] (31) | \-------------------------------------------------------------- Bostr.2902s0314.1.p [Boechera stricta] (29) Root part of tree: /------------------------------------------------------------------- Csa13g018600.1 [Camelina sativa] (1) | |------------------------------------------------------------------- Csa20g023310.1 [Camelina sativa] (32) | |------------------------------------------------------------------- Csa08g007940.1 [Camelina sativa] (43) | + /---------------------------------------- (110) | | | | /------------- 909555 [Arabidopsis lyrata] (20) | /------89-----+ /------52-----+ | | | | \------------- AT5G15800.2 [Arabidopsis thaliana] (54) | | \-----99-----+ \-----100----+ \--------------------------- Araha.2816s0008.1.p [Arabidopsis halleri] (23) | | /------------- Carubv10001783m [Capsella rubella] (41) \-------------------100------------------+ \------------- Cagra.6845s0024.1.p [Capsella grandiflora] (55) |