PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.222
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 30128.4 Da    PI: 9.0732
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.222genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-312777151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  evm.model.supercontig_14.222 27 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 77
                                  79***********************************************96 PP
2K-box98.31.1e-321001919100
                         K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                   + +++ es+++e+ kLk + e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk++Rs+K++++l+q+ +lq+ke++l e
  evm.model.supercontig_14.222 100 KPAKELESSYREYLKLKTRFEALQRTQRNLLGEDLGPLNTKELEQLERQLESSLKHVRSTKTQYMLDQLTDLQNKEHMLLE 180
                                   4567899************************************************************************** PP

                         K-box  90 enkaLrkklee 100
                                   +n+aL+ kl+e
  evm.model.supercontig_14.222 181 ANRALTIKLDE 191
                                   *****999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-381978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.0851979IPR002100Transcription factor, MADS-box
CDDcd002653.18E-432194No hitNo description
PRINTSPR004041.0E-322141IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-332195IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PfamPF003192.6E-262875IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-324156IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-325677IPR002100Transcription factor, MADS-box
PfamPF014862.7E-27103189IPR002487Transcription factor, K-box
PROSITE profilePS5129715.225105195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MQEFKSHQIE ASIISTLLIF RGRVELKRIE NKINRQVTFA KRRNGLLKKA YELSVLCDAE  60
VALIIFSNRG KLYEFCSSSS MLKTLDRYQK CSYGAVEVSK PAKELESSYR EYLKLKTRFE  120
ALQRTQRNLL GEDLGPLNTK ELEQLERQLE SSLKHVRSTK TQYMLDQLTD LQNKEHMLLE  180
ANRALTIKLD EISARNHLRV AWEGSEQNVS YGHQHAQSQG LFQPLECNPT LQIGYNPVGS  240
DQMTAAATSQ GQQVNGFIPG WML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-36931891101Developmental protein SEPALLATA 3
4ox0_B8e-36931891101Developmental protein SEPALLATA 3
4ox0_C8e-36931891101Developmental protein SEPALLATA 3
4ox0_D8e-36931891101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6599900.0EU659990.1 Carica papaya MADS1 (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905358.10.0developmental protein SEPALLATA 1-like, partial
SwissprotQ8LLR21e-151MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLB2ZG411e-180B2ZG41_CARPA; MADS1
STRINGevm.model.supercontig_14.2220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32892765
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-125MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]