PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_3.196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 259aa MW: 29781.9 Da PI: 8.5788 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.9 | 8.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCda++++iifs++gklye++s evm.model.supercontig_3.196 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDADISLIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 91.3 | 1.7e-30 | 108 | 192 | 16 | 100 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++qe+ kLk++++ Lqr+qR+llGedL +L+ keL+qLe++Le+slk+iRs+K+++++ q+ +lq++e+ l e+n++Lrkk evm.model.supercontig_3.196 108 QSYQEYLKLKARVDVLQRSQRNLLGEDLAPLDTKELEQLEHRLETSLKQIRSTKTQFMIGQLADLQNREQILLEANRSLRKK 189 5789****************************************************************************** PP K-box 98 lee 100 lee evm.model.supercontig_3.196 190 LEE 192 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.54E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-33 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.936 | 106 | 196 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.8E-26 | 107 | 190 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD ADISLIIFSN RGKLYEFCSS 60 SSMVEMLEKY YQCSYGAQGI PNQPVHEIQF HSDIMRPEEN NYKHRGMQSY QEYLKLKARV 120 DVLQRSQRNL LGEDLAPLDT KELEQLEHRL ETSLKQIRST KTQFMIGQLA DLQNREQILL 180 EANRSLRKKL EEGSSQFPIR LDWEPSCQSV HLPANSGGFF YPLQTNSFGY HPLATEEVSF 240 VAGHNQNVSG FSMPGWML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 7e-30 | 107 | 193 | 18 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 7e-30 | 107 | 193 | 18 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 7e-30 | 107 | 193 | 18 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 7e-30 | 107 | 193 | 18 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_3.196 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021909244.1 | 1e-174 | MADS-box protein CMB1-like | ||||
Swissprot | Q8LLR2 | 1e-101 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A2I4QQT5 | 1e-110 | A0A2I4QQT5_HEVBR; HbMADS-box protein | ||||
STRING | evm.model.supercontig_3.196 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3289 | 27 | 65 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 5e-92 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_3.196 |
Publications ? help Back to Top | |||
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