PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021357m
Common NameCICLE_v10021357mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 302aa    MW: 34677 Da    PI: 9.8983
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021357mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.5e-3160110151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Ciclev10021357m  60 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 110
                      79***********************************************96 PP
2K-box99.35.6e-3313722512100
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      ++++s +qe+ +Lk  +e Lqr+qR+llGedLe+Ls keL+qLe+qLe+slk++Rs+K++ +++q+++lqk+e+ l e nk Lrkkl+e
  Ciclev10021357m 137 ETQQSTYQEYLRLKTAVELLQRSQRNLLGEDLEPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKLDE 225
                      67899*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-4152111IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.20752112IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-3253131IPR002100Transcription factor, MADS-box
CDDcd002654.27E-4253125No hitNo description
PROSITE patternPS00350054108IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-325474IPR002100Transcription factor, MADS-box
PfamPF003193.2E-2661108IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-327489IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-3289110IPR002100Transcription factor, MADS-box
PfamPF014862.9E-27138223IPR002487Transcription factor, K-box
PROSITE profilePS5129715.957139229IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKKDQSWRVS DERTYLTLQC LIIETARLCG KAHKKKKERE RESVCGKKRK IMGRGRVELK  60
RIENKINRQV TFAKRRNGLL KKAYELSVLC DAEVALIIFS NRGKLYEFCS SPSIMKTLER  120
YHRCSFGALE ANRPPIETQQ STYQEYLRLK TAVELLQRSQ RNLLGEDLEP LSTKELEQLE  180
HQLETSLKHV RSTKTQCMVD QLSDLQKREQ VLLELNKGLR KKLDESNIAH QVPPHRLAWE  240
AASAGQNITY NRYPVQSEGF FQPLSGGTPI LQIGYNPMGS EEAHIPVHAQ NVTGFIPGWM  300
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-271262231101Developmental protein SEPALLATA 3
4ox0_B4e-271262231101Developmental protein SEPALLATA 3
4ox0_C4e-271262231101Developmental protein SEPALLATA 3
4ox0_D4e-271262231101Developmental protein SEPALLATA 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13449KKKERERESVCGKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477713.10.0MADS-box protein CMB1-like isoform X3
RefseqXP_024045679.10.0MADS-box protein 04g005320 isoform X2
SwissprotQ8LLR21e-121MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLV4VMI60.0V4VMI6_9ROSI; Uncharacterized protein
STRINGXP_006440804.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32892765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-101MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]