PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29640.9 Da PI: 8.6726 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Gh_D07G1814 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 73.2 | 7.4e-25 | 82 | 142 | 9 | 69 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + +++ es+++e+ kLk+++e+Lqr+qR++lGedL++L+ keL+qLe+qLe+slk++Rs+K Gh_D07G1814 82 KPAKELESSYREYLKLKARYEELQRTQRNFLGEDLGPLNSKELEQLEHQLESSLKHVRSTK 142 4567899****************************************************99 PP | |||||||
3 | K-box | 15.3 | 8.1e-07 | 156 | 187 | 69 | 100 |
K-box 69 KnellleqieelqkkekelqeenkaLrkklee 100 +++++l+q++elq+ke++l e+n+aL+ klee Gh_D07G1814 156 QTQYMLDQLSELQNKEQMLMETNRALSIKLEE 187 689************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-34 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.14E-45 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 9.9E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.2E-25 | 85 | 185 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.554 | 87 | 191 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLDRY QKCSYGAVEV SKPAKELESS YREYLKLKAR YEELQRTQRN FLGEDLGPLN 120 SKELEQLEHQ LESSLKHVRS TKAPNSTLFY FNLLLQTQYM LDQLSELQNK EQMLMETNRA 180 LSIKLEEVSA RNQFRVSWEG GEQSVAFTNQ QAQSMGLFQP LECNPTLQIG YCNPVASDQM 240 AATTHAQQVN GFIPGWML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 7e-31 | 75 | 185 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 7e-31 | 75 | 185 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 7e-31 | 75 | 185 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 7e-31 | 75 | 185 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19739 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM236433 | 0.0 | HM236433.1 Gossypium hirsutum MADS17 mRNA, complete cds. | |||
GenBank | JF271884 | 0.0 | JF271884.1 Gossypium hirsutum SEPALLATA1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016746067.1 | 1e-178 | PREDICTED: developmental protein SEPALLATA 1-like | ||||
Swissprot | Q8LLR2 | 1e-141 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A1U8P4B9 | 1e-176 | A0A1U8P4B9_GOSHI; developmental protein SEPALLATA 1-like | ||||
STRING | Gorai.001G207300.1 | 1e-176 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3289 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-120 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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