PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00076267001 | ||||||||
Common Name | GSBRNA2T00076267001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28516.5 Da PI: 8.5505 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.8 | 2.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaev++i+fs++gklye++s GSBRNA2T00076267001 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 89.9 | 4.9e-30 | 79 | 173 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + +++ +++ e++++e+ kLk ++enLq +qR+llGedL++L+ keL+qLe++L+ slk++R K++++l+q+ +lq ke++l e+n+aL GSBRNA2T00076267001 79 EVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERRLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLEANRAL 168 5566788999******************************************************************************** PP K-box 95 rkkle 99 + kle GSBRNA2T00076267001 169 SIKLE 173 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.319 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.75E-45 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 7.98E-34 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-23 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.827 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST 60 SNMLKTLDRY QKCSYGSVEV NNKPAKELEN SYREYLKLKG RYENLQLQQR NLLGEDLGPL 120 NSKELEQLER RLDGSLKQVR CIKTQYMLDQ LTDLQGKEHM LLEANRALSI KLEDMIGVRS 180 HQIGGAWEGG DQQNVAYGHH QAQSQGLFQS LECDPTLQIG YSHPVCSEQM AVTTQGQNQP 240 GNGYIPGWML * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 6e-32 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 6e-32 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 6e-32 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 6e-32 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.9611 | 0.0 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed early during flower development. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00076267001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC967959 | 0.0 | KC967959.1 Brassica oleracea var. viridis SEP2.b (SEP2.b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584599.1 | 0.0 | PREDICTED: developmental protein SEPALLATA 2 | ||||
Swissprot | P29384 | 1e-174 | SEP2_ARATH; Developmental protein SEPALLATA 2 | ||||
TrEMBL | A0A078I0Y2 | 0.0 | A0A078I0Y2_BRANA; BnaC05g48320D protein | ||||
TrEMBL | A0A0D3CN93 | 0.0 | A0A0D3CN93_BRAOL; Uncharacterized protein | ||||
TrEMBL | S5YEL1 | 0.0 | S5YEL1_BRAOV; SEP2.b | ||||
STRING | Bo5g152700.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3289 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-176 | MIKC_MADS family protein |