PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00078.1_g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 294aa MW: 33745.7 Da PI: 8.7981 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.4 | 2.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaev++i+fs++gklye++s Rsa1.0_00078.1_g00024.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 91.6 | 1.4e-30 | 78 | 173 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 + +++ +++ e++++e+ kLk ++enLq +qR+llGedL++L+ keL+qLe+qL+ slk++R K++++l+q+ +lq ke++l e Rsa1.0_00078.1_g00024.1 78 IEVNNKPAKELENSYREYLKLKGRYENLQLQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLTDLQGKEHMLLE 163 56667788999*************************************************************************** PP K-box 90 enkaLrkkle 99 +n+aL++kle Rsa1.0_00078.1_g00024.1 164 ANRALSMKLE 173 *******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.319 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.48E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.03E-33 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.9E-24 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.427 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN RGKLYEFCST 60 SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG RYENLQLQQR NLLGEDLGPL 120 NSKELEQLER QLDGSLKQVR CIKTQYMLDQ LTDLQGKEHM LLEANRALSM KLEDMIGMRS 180 HHVGGTWEGG DQQNVAYGHH QTQSQGLFXG KAVISKMLPM DIIRLNLRDC SSLLNVIPLC 240 KLGLEFFRHC SRLLNLCYCG DENRYNHPVC SEQMAVTTQG QIQPGNGYIP GWML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-32 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-32 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-32 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-32 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00078.1_g00024.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC967959 | 0.0 | KC967959.1 Brassica oleracea var. viridis SEP2.b (SEP2.b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490821.1 | 1e-167 | PREDICTED: developmental protein SEPALLATA 2 | ||||
Swissprot | P29384 | 1e-154 | SEP2_ARATH; Developmental protein SEPALLATA 2 | ||||
TrEMBL | A0A3P5ZLJ7 | 1e-163 | A0A3P5ZLJ7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FDJ9 | 1e-163 | M4FDJ9_BRARP; Uncharacterized protein | ||||
STRING | Bra039170.1-P | 1e-163 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3289 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-157 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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