PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g007940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 304aa    MW: 34546.5 Da    PI: 9.4976
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g007940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.41.4e-26951143
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++
  Csa08g007940.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNQ 51
                    79***************************************85 PP
2SRF-TF99.31.5e-3160110151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Csa08g007940.1  60 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 110
                     79***********************************************96 PP
3K-box96.25e-32129224499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + +++ +++ e++++e+ kLk ++e+Lqr+qR+llGedL++L+ keL+qLe+qL+ slk++Rs K++++l+q+++lq+ke++l e+n+aL +kl
  Csa08g007940.1 129 IEVNNKPAKELENSYREYLKLKGRYESLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKL 223
                     56667788999*********************************************************************************998 PP

           K-box  99 e 99 
                     +
  Csa08g007940.1 224 D 224
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.75E-24150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.791150IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-28151IPR002100Transcription factor, MADS-box
CDDcd001206.07E-28249No hitNo description
PfamPF003197.7E-231050IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-4152111IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.20752112IPR002100Transcription factor, MADS-box
CDDcd002651.32E-4353128No hitNo description
SuperFamilySSF554551.31E-3353131IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-325474IPR002100Transcription factor, MADS-box
PROSITE patternPS00350054108IPR002100Transcription factor, MADS-box
PfamPF003193.2E-2661108IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-327489IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-3289110IPR002100Transcription factor, MADS-box
PfamPF014861.9E-25136223IPR002487Transcription factor, K-box
PROSITE profilePS5129714.811139229IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN QMGRGRVELK  60
RIENKINRQV TFAKRRNGLL KKAYELSVLC DAEVALIIFS NRGKLYEFCS SPNMLKTLDR  120
YQKCSYGSIE VNNKPAKELE NSYREYLKLK GRYESLQRQQ RNLLGEDLGP LNSKELEQLE  180
RQLDGSLKQV RSIKTQYMLD QLSDLQNKEQ MLLETNRALA MKLDDMIGVR SHHMGGGGGG  240
WDGGEQNVTY AHHQAHSQGL YQPLECNPTL QIGYDNPVCS EQITATTQAQ AQQGNGYIPG  300
WML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-341262251103Developmental protein SEPALLATA 3
4ox0_B3e-341262251103Developmental protein SEPALLATA 3
4ox0_C3e-341262251103Developmental protein SEPALLATA 3
4ox0_D3e-341262251103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g007940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186080.0AK118608.1 Arabidopsis thaliana At5g15800 mRNA for putative transcription factor (AGL2), complete cds, clone: RAFL19-86-A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400104.11e-174developmental protein SEPALLATA 1
SwissprotP293821e-163SEP1_ARATH; Developmental protein SEPALLATA 1
TrEMBLA0A178UQB31e-176A0A178UQB3_ARATH; SEP1
TrEMBLQ5XXN71e-176Q5XXN7_ARATH; SEPALLATA1
STRINGXP_006400104.11e-174(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32892765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-165MIKC_MADS family protein