PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130071001 | ||||||||
Common Name | GSBRNA2T00130071001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 260aa MW: 29530.7 Da PI: 8.5505 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s GSBRNA2T00130071001 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 94.6 | 1.6e-31 | 78 | 173 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 + +++ +++ e++++e+ kLk ++e Lqr+qR+llGedL++L+ keL+q+e+qL+ slk++Rs K++++l+q+++lq ke++l e+n+a GSBRNA2T00130071001 78 IEVNNKPAKELENSYREYLKLKGRYEGLQRQQRNLLGEDLGPLNSKELEQIERQLDGSLKQVRSIKTQYMLDQLSDLQTKEQMLLETNRA 167 56667788999******************************************************************************* PP K-box 94 Lrkkle 99 L +kl+ GSBRNA2T00130071001 168 LAMKLD 173 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.53E-45 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 4.97E-34 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-24 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.317 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SNMIKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG RYEGLQRQQR NLLGEDLGPL 120 NSKELEQIER QLDGSLKQVR SIKTQYMLDQ LSDLQTKEQM LLETNRALAM KLDDMIGVRS 180 HHMGGGGGGW EGNEHNVSYA HHQAQSQGLF QPLECNPTLQ MGCFVLRGSS MYDNPVCSEQ 240 ITATTQAQAQ PGYIPDWML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-34 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-34 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-34 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-34 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10156 | 0.0 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed early during flower development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in carpels, and weakly in stamens. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00092 | SELEX | Transfer from AT5G15800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130071001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ508053 | 0.0 | AJ508053.1 Brassica oleracea var. botrytis mRNA for MADS-box protein SEP1-a (sep1-a gene). | |||
GenBank | KC967957 | 0.0 | KC967957.1 Brassica oleracea var. viridis SEP1.a (SEP1.a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625167.1 | 1e-178 | PREDICTED: developmental protein SEPALLATA 1 | ||||
Refseq | XP_013728678.1 | 1e-178 | developmental protein SEPALLATA 1-like | ||||
Refseq | XP_013729544.1 | 1e-178 | developmental protein SEPALLATA 1-like | ||||
Swissprot | P29382 | 1e-154 | SEP1_ARATH; Developmental protein SEPALLATA 1 | ||||
TrEMBL | A0A3P6AGB5 | 0.0 | A0A3P6AGB5_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo3g010720.1 | 1e-178 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3289 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.2 | 1e-156 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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