PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K02546.1.p | ||||||||
Common Name | EUGRSUZ_K02546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28149.1 Da PI: 9.0931 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Eucgr.K02546.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 103.2 | 3.3e-34 | 81 | 173 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + +++++++q++ kLk ++e Lqr+qR+llGe+L++L+ keL+qLe+qLe+slk+iRs K++++++q+ +lq+ke++l e+n++Lrkklee Eucgr.K02546.1.p 81 NCSINEMQNSYQDYLKLKTRVEVLQRSQRNLLGEELGPLNSKELEQLEHQLENSLKQIRSAKTQFMFDQLAHLQHKEQMLVEANRELRKKLEE 173 467899************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.726 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.56E-46 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-34 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.9E-27 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.228 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMMKTIEKY QKCSYGSLET NCSINEMQNS YQDYLKLKTR VEVLQRSQRN LLGEELGPLN 120 SKELEQLEHQ LENSLKQIRS AKTQFMFDQL AHLQHKEQML VEANRELRKK LEESNTRIPL 180 RLGWEAEDHN NISYSRLPTQ SQGLIFQPLG GNPTLQIGYN PAGSNELNVS AADQHPNGFI 240 PGWML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 1e-29 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-29 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-29 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-29 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K02546.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF029977 | 0.0 | AF029977.1 Eucalyptus grandis MADS box protein (EGM3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289642.1 | 1e-176 | developmental protein SEPALLATA 1-like | ||||
Swissprot | Q8LLR2 | 1e-119 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A059A6I6 | 0.0 | A0A059A6I6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037259.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3289 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-109 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K02546.1.p |
Publications ? help Back to Top | |||
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