PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014337t1
Common NameTCM_014337
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 408aa    MW: 46247.6 Da    PI: 8.8421
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014337t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-31959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Thecc1EG014337t1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59
                      79***********************************************96 PP
2K-box103.13.7e-34791736100
             K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       ++s ++++++s++qe+ kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk+iRs+K++ +l+q+ +lq++e++l e+nk+Lr+kl
  Thecc1EG014337t1  79 DTSRSASETQSSYQEYLKLKARVEVLQRSQRNLLGEDLGPLNTKELEQLENQLETSLKQIRSTKSQAMLDQLGDLQNREQMLVETNKSLRRKL 171
                       34578999************************************************************************************9 PP

             K-box  99 ee 100
                       ee
  Thecc1EG014337t1 172 EE 173
                       87 PP
3K-box96.93.1e-32226317899
             K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++++++++s++qe  kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk+iRs+K++ +l+q+ +lq++e++l e+nk+Lr+k+ 
  Thecc1EG014337t1 226 NVAAQNQNSSYQECLKLKARVEVLQRSQRNLLGEDLGPLNTKELEQLENQLETSLKQIRSTKSQAMLDQLGDLQNREQMLVETNKSLRRKYS 317
                       57889999*********************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.473161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-33278IPR002100Transcription factor, MADS-box
CDDcd002656.12E-43276No hitNo description
PRINTSPR004043.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014867.8E-2884171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.07787177IPR002487Transcription factor, K-box
PfamPF014863.0E-27230316IPR002487Transcription factor, K-box
PROSITE profilePS5129715.106232322IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS  60
SSMMKTLEKY QKCSYSTVDT SRSASETQSS YQEYLKLKAR VEVLQRSQRN LLGEDLGPLN  120
TKELEQLENQ LETSLKQIRS TKSQAMLDQL GDLQNREQML VETNKSLRRK LEELSAQPHL  180
RLAWETGGQN IPYNRLPAQS EGFFQLLGGS SSLQIGYNPV VSDEMNVAAQ NQNSSYQECL  240
KLKARVEVLQ RSQRNLLGED LGPLNTKELE QLENQLETSL KQIRSTKSQA MLDQLGDLQN  300
REQMLVETNK SLRRKYSASL LSTVLILVQI LFHLLEELSA QPPFRLAWET GGQNIPYNRL  360
PAQSEGFFQL LGGSSSFRIG YNPVVSDEMN VAAQNQNVCG YFPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-308931319101Developmental protein SEPALLATA 3
4ox0_B2e-308931319101Developmental protein SEPALLATA 3
4ox0_C2e-308931319101Developmental protein SEPALLATA 3
4ox0_D2e-308931319101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972163.11e-154PREDICTED: developmental protein SEPALLATA 1
SwissprotQ8LLR21e-118MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A061FZ270.0A0A061FZ27_THECC; K-box region and MADS-box transcription factor family protein
STRINGEOY221320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32892765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-102MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]