PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2109
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Subtree rooted at node 139: /--------------------- Thecc1EG037666t1 [Theobroma cacao] (2) | | /----- Gh_A05G0220 [Gossypium hirsutum] (19) | /-99-+ | | \----- Cotton_A_09366_BGI-A2_v1.0 [Gossypium arboreum] (68) /-100+ /-100+ | | | | /----- Gh_D05G0299 [Gossypium hirsutum] (35) | | | \-100+ | | | \----- Gorai.009G031400.1 [Gossypium raimondii] (52) | \-100-+ | | /----- Gorai.010G082800.1 [Gossypium raimondii] (41) | | /-88-+ | | | \----- Gh_D06G0725 [Gossypium hirsutum] (42) | \-100+ /-98-+ \---------- Cotton_A_33698_BGI-A2_v1.0 [Gossypium arboreum] (47) | | | | /----- Neem_23334_f_1 [Azadirachta indica] (18) | | /-100+ | | | \----- Neem_2839_f_2 [Azadirachta indica] (64) | | /-100+ | | | | /----- Ciclev10009004m [Citrus clementina] (30) | | | \-100+ | \----99----+ \----- orange1.1g021859m [Citrus sinensis] (53) /-100+ | | | \--------------- evm.model.supercontig_93.28 [Carica papaya] (24) | | | | /--------------- Eucgr.C00899.1.p [Eucalyptus grandis] (28) | | | | | | /----- Ciclev10008943m [Citrus clementina] (46) | | /--99-+ /-100+ /---100---+ | | | | \----- orange1.1g020987m [Citrus sinensis] (67) | | | | \-100+ | | \---100---+ \---------- Eucgr.C03048.1.p [Eucalyptus grandis] (62) | | | | | \--------------------- Eucgr.C03895.1.p [Eucalyptus grandis] (72) | | | | /----- XP_010545872.1 [Tarenaya hassleriana] (21) | \--------------100-------------+ | \----- XP_010539131.1 [Tarenaya hassleriana] (51) | | /---------- GSBRNA2T00075299001 [Brassica napus] (3) | | | /-100+ /----- GSBRNA2T00075300001 [Brassica napus] (23) | | \-98-+ | /--96-+ \----- XP_009137582.1 [Brassica rapa] (39) | | | | /-100+ \--------------- XP_013596028.1 [Brassica oleracea] (65) | | | | | \--------------------- GSBRNA2T00064418001 [Brassica napus] (45) | | | | /----- XP_009142013.1 [Brassica rapa] (11) | | /-100+ | | | \----- GSBRNA2T00149587001 [Brassica napus] (29) | /-100+ /-100+ /-100-+ | | | | /----- GSBRNA2T00157484001 [Brassica napus] (37) | | | | | \-100+ | | | | /-100-+ \----- XP_013605327.1 [Brassica oleracea] (59) | | | | | | | | | | | | /----- RrC3834_p4 [Raphanus raphanistrum] (40) | | | | | \---100---+ | | /-95-+ \-99-+ \----- Rsa1.0_00102.1_g00018.1 [Raphanus sativus] (71) | | | | | | | | | |--------------------- Tp7g24170 [Thellungiella parvula] (25) | | | | | | | | | \--------------------- 676745902 [Sisymbrium irio] (69) | | | | | | | \------------------------------- Thhalv10025461m [Eutrema salsugineum] (5) | | | | | /-100+ /---------- AT4G26150.1 [Arabidopsis thaliana] (4) | | | | | | | | | /------100------+ /----- 492197 [Arabidopsis lyrata] (12) | | | | | \-99-+ | | | | | \----- Araha.3974s0026.1.p [Arabidopsis halleri] (74) | | | | | | | | | | /---------- Csa12g025910.1 [Camelina sativa] (10) | | | | | | | | | \---100---+ /-100+ /----- Csa10g016760.1 [Camelina sativa] (20) /-99-+ \-100+ | | \-100+ | | | | | \----- Csa11g018240.1 [Camelina sativa] (44) | | | | /--61-+ | | | | | | /----- Carubv10005113m [Capsella rubella] (15) | | | | | \---100---+ | | | \-100+ \----- Cagra.3467s0056.1.p [Capsella grandiflora] (43) | | | | | | | \--------------------- Bostr.7867s0434.1.p [Boechera stricta] (14) | | | | | \----------------------------------------- AA81G00049 [Aethionema arabicum] (48) | | | | /----- 495776 [Arabidopsis lyrata] (7) | | /-100+ | | | \----- Araha.14682s0003.1.p [Arabidopsis halleri] (22) | | /-100+ /-98-+ | | \---------- AT5G56860.1 [Arabidopsis thaliana] (36) | | | /-100-+ | | | | \--------------- Bostr.26833s0575.1.p [Boechera stricta] (26) | | | /-89-+ | | | | | /----- Carubv10026556m [Capsella rubella] (60) | | | | \------100------+ | | | | \----- Cagra.4138s0005.1.p [Capsella grandiflora] (66) | | \------------99-----------+ | | | /---------- Csa11g090330.1 [Camelina sativa] (50) | | | | | | \------100------+ /----- Csa02g061170.1 [Camelina sativa] (55) | | \-100+ | | \----- Csa18g029770.1 [Camelina sativa] (63) | | | \--------------------------------------------------------- AA44G00699 [Aethionema arabicum] (9) | --97-+ /----- RrC11754_p1 [Raphanus raphanistrum] (8) | /---100---+ | | \----- Rsa1.0_17697.1_g00001.1 [Raphanus sativus] (13) | | | /-100-+ /----- XP_009120195.1 [Brassica rapa] (32) | | | /-100+ | | | | \----- GSBRNA2T00052811001 [Brassica napus] (54) | | \-72-+ | /-100+ | /----- GSBRNA2T00053040001 [Brassica napus] (58) | | | \-100+ | | | \----- XP_013606072.1 [Brassica oleracea] (61) | | | | | \--------------------- 676710578 [Sisymbrium irio] (38) | | | | /---------- GSBRNA2T00046594001 [Brassica napus] (31) \-----------------99----------------+ | | /-100+ /----- XP_009132168.1 [Brassica rapa] (49) | | \-100+ | /-100-+ \----- GSBRNA2T00148627001 [Brassica napus] (57) | | | | | \--------------- XP_013621875.1 [Brassica oleracea] (73) \-100+ | /----- RrC1037_p1 [Raphanus raphanistrum] (33) \------100------+ \----- Rsa1.0_00090.1_g00012.1 [Raphanus sativus] (75) Root part of tree: /------------------------------------------------------------------- GSBRNA2T00068371001 [Brassica napus] (1) | |------------------------------------------------------------------- XP_013616331.1 [Brassica oleracea] (34) | | /----------------- (139) | | + /------100------+----------------- Tp6g18580 [Thellungiella parvula] (27) | | | | | \----------------- Thhalv10013793m [Eutrema salsugineum] (70) | /-------100------+ | | | /----------------- Rsa1.0_00716.1_g00014.1 [Raphanus sativus] (6) | | \------100------+ \-------100------+ \----------------- RrC680_p1 [Raphanus raphanistrum] (16) | | /----------------- XP_009126922.1 [Brassica rapa] (17) \---------------100--------------+ \----------------- GSBRNA2T00012910001 [Brassica napus] (56) |