PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020987m
Common NameCISIN_1g020987mg, LOC102626792
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 320aa    MW: 35283.4 Da    PI: 9.759
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020987mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64.1e-19182215134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  orange1.1g020987m 182 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 215
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.66E-13175220No hitNo description
PROSITE profilePS5011412.993176212IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-18176227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-15180216IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-14181213No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003207.2E-17182215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAPMYLNPAQ DHSDPFRLAE AQKRDHQRLQ VLHSSSHNRP AASVSRPIFL NSSTQDQGMI  60
KLEGSQQHDQ KIDQRIAGGG SSDLQSSMSQ PKTMTNKLAI RRREVGEGST SDNSSYTSSS  120
SGESMSSKMR LANKIINSSS VSTGTHDESV KVAEKLLHEH DNIEVHYFTT NSSNSNNTVR  180
ICSDCNTTTT PLWRSGPRGP KSLCNACGIR QRKARKAMQA AAESGTTTAK DNSSFSKIKL  240
QNNMEKKPRT SHVAQYKKVQ CNTPDPDPPH HEYRSQRKLC FKDFALSLSS NSALKQVFPR  300
DVEEAAILLM ELSCGFSHT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450837.10.0putative GATA transcription factor 22
RefseqXP_006475927.10.0putative GATA transcription factor 22 isoform X1
TrEMBLA0A067GKC80.0A0A067GKC8_CITSI; Uncharacterized protein
TrEMBLV4UDD00.0V4UDD0_9ROSI; Uncharacterized protein
STRINGXP_006475927.10.0(Citrus sinensis)
STRINGXP_006450837.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-16cytokinin-responsive gata factor 1