PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g016760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 363aa MW: 40243.8 Da PI: 9.2583 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.7e-19 | 217 | 250 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + Csa10g016760.1 217 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 250 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.8E-18 | 211 | 264 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-12 | 215 | 251 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-15 | 215 | 250 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.11E-15 | 216 | 248 | No hit | No description |
Pfam | PF00320 | 5.2E-17 | 217 | 250 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.44 | 217 | 247 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 217 | 242 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGSNFHYSID LNEDQHHQPF FSSLGSSLHQ NHQPQHFHHQ ASSNLSSSMS PSLSYFPFLI 60 DSHQDQVYFG YNTNTFHGVL DTHLSQPLET IKFVSDVSSS SSDQMVPGKE TRLKLTIKKK 120 DTHQDQTNLP QYPTKGKTGT NTLKWVSSKV RLMKKKKAII TTTDSNKQHV NNDQSSNQSN 180 LDGDHDRHNN ISTNQYNIIV DQNGYNGSSN DCVIRICSDC NTTKTPLWRS GPRGPKSLCN 240 ACGIRQRKAR RAAATATGIS DESPPVLKKK MKNKNKRSNG VCNLSSPSDK KMITVEEAAT 300 AGDLETHNHS SMLSSSSSSD KFYFDDLAIL LSKSSAYQKV FPQDEKEAAI LLMALSYGMV 360 HG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (PubMed:22102866, PubMed:25077795). Involved in the modulation of chloroplast development, growth and division in a cytokinin-dependent manner (PubMed:22102866, PubMed:22811435). Repressor of the gibberellic acid (GA) signaling pathway that regulates flowering and modulates greening, in a SOC1-dependent manner (PubMed:20844019, PubMed:23739688, PubMed:25077795). Prevents the accumulation of SOC1 during flowering (PubMed:23739688). Promotes chlorophyll biosynthesis throughout the plant, by regulating chlorophyll biosynthetic genes (e.g. HEMA1 and GUN4) and chloroplast localized glutamate synthase (e.g. GLU1) (PubMed:18417639, PubMed:20844019, PubMed:21453984, PubMed:22102866, PubMed:23878229, PubMed:25077795). Involved in the regulation of sugar-sensing genes (e.g. HXK1, HXK2, STP13 and PLT6) (PubMed:18417639). Regulator of germination, senescence, elongation growth and flowering time (PubMed:20844019, PubMed:22102866, PubMed:23878229). Influences also leaf starch content (PubMed:22102866). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:21453984, ECO:0000269|PubMed:22102866, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000269|PubMed:25077795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g016760.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light (including both red and white lights) (PubMed:17208962, PubMed:17587690). Levels follow a circadian and diurnal rythm, with a peak at 20 hours, thus preempting dawn (PubMed:17208962). Activated by gibberellic acid (GA) (PubMed:20844019). Induced by cytokinin and derivatives (e.g. benzyladenine, t-Zeatin and 6-benzylaminopurine) in light conditions (PubMed:16212609, PubMed:17587690, PubMed:21453984, PubMed:22811435). Triggered by nitrate (PubMed:16262716). Negatively regulated by AP3/PI (PubMed:18417639). Strong accumulation during cold imbibition of nondormant seeds, but not at warm temperatures. Regulated by PIF transcription factors (PubMed:20844019). Repressed by HAN (PubMed:23335616). Inhibited by SOC1 (PubMed:23739688). Down-regulated by auxin (2,4D) and auxin response factors (e.g. ARF2 and ARF7) (PubMed:23878229). {ECO:0000269|PubMed:16212609, ECO:0000269|PubMed:17208962, ECO:0000269|PubMed:17587690, ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:21453984, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000303|PubMed:16262716}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049483 | 7e-69 | AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project). | |||
GenBank | AL161564 | 7e-69 | AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64. | |||
GenBank | CP002687 | 7e-69 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433543.1 | 0.0 | PREDICTED: putative GATA transcription factor 22 | ||||
Swissprot | Q9SZI6 | 1e-151 | GAT22_ARATH; Putative GATA transcription factor 22 | ||||
TrEMBL | R0GJ60 | 1e-180 | R0GJ60_9BRAS; Uncharacterized protein | ||||
STRING | XP_010433543.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2109 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-138 | cytokinin-responsive gata factor 1 |