PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013621875.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 384aa MW: 43143.2 Da PI: 9.1917 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.7 | 4.2e-20 | 225 | 259 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 CsnC+ttkTplWR+gp+g+k+LCnaCG+++rk ++ XP_013621875.1 225 CSNCNTTKTPLWRSGPRGPKSLCNACGIRQRKARQ 259 ********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-20 | 219 | 271 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-13 | 220 | 259 | No hit | No description |
PROSITE profile | PS50114 | 12.993 | 223 | 255 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.0E-16 | 223 | 258 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.87E-16 | 224 | 256 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 225 | 250 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.4E-18 | 225 | 259 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGSNFHYSID LNEEQNHHEQ PFFYPLGSSS SLLHNQVLSN SSCSSSSISS LSSYLPFFIN 60 SQEDQHVAYK NTYHVDHVHL SQPLKAKMFN GGSSSSYDHM VPKKETRLKL TIRKKDHHED 120 QTDFLHQNPT KPNSDSDKWM MSPKMRLIKN TITNNKQSTD HTSKNNNDHK EDHDLLNQNI 180 SLEEGHDEDL KKVSPRTTTA VARENRYSTI NENGYGNNNG LIRVCSNCNT TKTPLWRSGP 240 RGPKSLCNAC GIRQRKARQA AMAAATAEGD QEVMAARMRQ LPVKKKLQNK KKRSNGGDNY 300 DITPHVVAYT KKCKIKEGDE YAAAVVEISK STTSSDSSVS SNKLRFDDLT IMLSKSSAYQ 360 QVFPQDEKEA AVLLMALSYG MVHG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the inflorescence meristem (IM) and young flower buds (PubMed:23335616). Detected throughout the floral bud. In young flowers, restricted to the inner whorls, specifically the petals, stamens, and carpels (PubMed:18417639, PubMed:23335616). In older flowers, present in the petals, stamen filaments and carpels, with weaker expression in the anthers of the stamens (PubMed:18417639). Observed in anther locules, vascular strands, and ovules (PubMed:23335616). During imbibition, expressed in the endosperm, especially at the time of testa rupture. Later restricted to the embryonic root (PubMed:20844019). In mature embryos, observed in the cotyledons and hypocotyl. In young seedlings, mostly expressed in shoot tissues, including the tip, circumference, and vasculature of the cotyledons, the emerging leaves, the meristematic region, and the basal part of the hypocotyl, and, at low levels, in the primary roots. In older seedlings, accumulates in the green shoot tissues (PubMed:22811435). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23335616}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in leaves, and barely in stems, flowers and siliques. {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:22811435}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (PubMed:22102866, PubMed:25077795). Involved in the modulation of chloroplast development, growth and division in a cytokinin-dependent manner (PubMed:22102866, PubMed:22811435). Repressor of the gibberellic acid (GA) signaling pathway that represses flowering and modulates greening, in a SOC1-dependent manner (PubMed:20844019, PubMed:23739688, PubMed:25077795). Prevents the accumulation of SOC1 during flowering (PubMed:23739688). Promotes chlorophyll biosynthesis throughout the plant, by regulating chlorophyll biosynthetic genes (e.g. HEMA1 and GUN4) and chloroplast localized glutamate synthase (e.g. GLU1) (PubMed:18417639, PubMed:20844019, PubMed:22102866, PubMed:23878229, PubMed:25077795). Involved in the regulation of sugar-sensing genes (e.g. HXK1, HXK2, STP13 and PLT6) (PubMed:18417639). Regulator of germination, senescence, elongation growth and flowering time (PubMed:20844019, PubMed:22102866, PubMed:23878229). Influences also leaf starch content (PubMed:22102866). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:22102866, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000269|PubMed:25077795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013621875.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by gibberellic acid (GA) (PubMed:20844019). Negatively regulated by AP3/PI (PubMed:18417639). Strong accumulation during cold imbibition of nondormant seeds, but not at warm temperatures. Regulated by PIF transcription factors (PubMed:20844019). Induced by cytokinin (e.g. benzyladenine) (PubMed:22811435). Repressed by HAN (PubMed:23335616). Inhibited by SOC1 (PubMed:23739688). Down-regulated by auxin (2,4D) and auxin response factors (e.g. ARF2 and ARF7) (PubMed:23878229). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621875.1 | 0.0 | PREDICTED: GATA transcription factor 21-like | ||||
Swissprot | Q5HZ36 | 1e-161 | GAT21_ARATH; GATA transcription factor 21 | ||||
TrEMBL | A0A0D3B331 | 0.0 | A0A0D3B331_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g019610.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2109 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 1e-159 | GATA family protein |