PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g025910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 365aa    MW: 40678.3 Da    PI: 9.5915
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g025910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.7e-19217250134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Csa12g025910.1 217 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 250
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-18211273IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12214250No hitNo description
Gene3DG3DSA:3.30.50.103.3E-15215250IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.37E-15216248No hitNo description
PfamPF003205.2E-17217250IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44217247IPR000679Zinc finger, GATA-type
PROSITE patternPS003440217242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045454Biological Processcell redox homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGSNFHYTID LNEDQHHQPF FSSLGSSLHQ NHQQQHFHHH ASSNLSSSMS PSLSYFPFLI  60
DSHQDQVYFG YNNSTFHGVL DTHLSQPLET NKFVSDVSSS SSDQMVPEKE TRLKLTIKKK  120
DNHQDQTKLP QYPTKGKTGT NTLKWVSSKV RLMKKKKAII TTTDINKQHV NSDQSSNQSN  180
LEGDHDHHNN ISTNQYNIIV DQNGYNGSSN DCVIRICSDC NTTKTPLWRS GPRGPKSLCN  240
ACGIRQRKAR RAAATATGIS DVSPPVLKKK MKNKNKRSNN GVYNLSSPSD KKMITVEEAA  300
AARDMETQNK SSMLSSSSSS SDKFYFDDLA ILLSKSSAYQ KVFPQDEKEA AILLMALSYG  360
MVHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (PubMed:22102866, PubMed:25077795). Involved in the modulation of chloroplast development, growth and division in a cytokinin-dependent manner (PubMed:22102866, PubMed:22811435). Repressor of the gibberellic acid (GA) signaling pathway that regulates flowering and modulates greening, in a SOC1-dependent manner (PubMed:20844019, PubMed:23739688, PubMed:25077795). Prevents the accumulation of SOC1 during flowering (PubMed:23739688). Promotes chlorophyll biosynthesis throughout the plant, by regulating chlorophyll biosynthetic genes (e.g. HEMA1 and GUN4) and chloroplast localized glutamate synthase (e.g. GLU1) (PubMed:18417639, PubMed:20844019, PubMed:21453984, PubMed:22102866, PubMed:23878229, PubMed:25077795). Involved in the regulation of sugar-sensing genes (e.g. HXK1, HXK2, STP13 and PLT6) (PubMed:18417639). Regulator of germination, senescence, elongation growth and flowering time (PubMed:20844019, PubMed:22102866, PubMed:23878229). Influences also leaf starch content (PubMed:22102866). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:21453984, ECO:0000269|PubMed:22102866, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g025910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light (including both red and white lights) (PubMed:17208962, PubMed:17587690). Levels follow a circadian and diurnal rythm, with a peak at 20 hours, thus preempting dawn (PubMed:17208962). Activated by gibberellic acid (GA) (PubMed:20844019). Induced by cytokinin and derivatives (e.g. benzyladenine, t-Zeatin and 6-benzylaminopurine) in light conditions (PubMed:16212609, PubMed:17587690, PubMed:21453984, PubMed:22811435). Triggered by nitrate (PubMed:16262716). Negatively regulated by AP3/PI (PubMed:18417639). Strong accumulation during cold imbibition of nondormant seeds, but not at warm temperatures. Regulated by PIF transcription factors (PubMed:20844019). Repressed by HAN (PubMed:23335616). Inhibited by SOC1 (PubMed:23739688). Down-regulated by auxin (2,4D) and auxin response factors (e.g. ARF2 and ARF7) (PubMed:23878229). {ECO:0000269|PubMed:16212609, ECO:0000269|PubMed:17208962, ECO:0000269|PubMed:17587690, ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:21453984, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000303|PubMed:16262716}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0494831e-70AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project).
GenBankAL1615641e-70AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.
GenBankCP0026871e-70CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448318.10.0PREDICTED: putative GATA transcription factor 22
SwissprotQ9SZI61e-153GAT22_ARATH; Putative GATA transcription factor 22
TrEMBLR0GJ600.0R0GJ60_9BRAS; Uncharacterized protein
STRINGXP_010448318.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-129cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]
  4. Klermund C, et al.
    LLM-Domain B-GATA Transcription Factors Promote Stomatal Development Downstream of Light Signaling Pathways in Arabidopsis thaliana Hypocotyls.
    Plant Cell, 2016. 28(3): p. 646-60
    [PMID:26917680]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Kobayashi K,Iwase A
    Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal.
    Plant Signal Behav, 2017. 12(6): p. e1338999
    [PMID:28594268]
  7. Bastakis E,Hedtke B,Klermund C,Grimm B,Schwechheimer C
    LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 582-599
    [PMID:29453227]