PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10026556m | ||||||||
Common Name | CARUB_v10026556mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 396aa MW: 44018.9 Da PI: 9.1052 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 3e-19 | 233 | 266 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + Carubv10026556m 233 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 266 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.9E-20 | 227 | 279 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-13 | 228 | 266 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-15 | 231 | 266 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.466 | 231 | 263 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.89E-12 | 232 | 260 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 233 | 258 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.8E-17 | 233 | 266 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGSNFHYSID LNEDQNHHEQ PFFCPLGSSS SLLHHHHHHN HQVPSNSSSS SSSISSLSSY 60 LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG SSSSYDHMVP KKETRLKLTI 120 RKKDHEDQTD HLHQNPTKPD SDSDKWLMSP KMRLIKKTIT NNNQPTDHET NNNNHKGNDH 180 YPLNHKTNFN EDHDDLNLKK VLTRTTTAAT TDNRYNTSNE IGYGNNNGVV RVCSDCNTTK 240 TPLWRSGPRG PKSLCNACGI RQRKARRAAM AAAAASGDQE VAVAARVQQS PLKKKLQNKK 300 KRSNGGEKYN LSPPVVAKAK KCKMVQAEEE ETVAGDSEIS KSTTSSNSSI SSNKFCFDDL 360 TIMLSKSSAY QQVFPQDEKE AAILLMALSY GMVHG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (PubMed:22102866, PubMed:25077795). Involved in the modulation of chloroplast development, growth and division in a cytokinin-dependent manner (PubMed:22102866, PubMed:22811435). Repressor of the gibberellic acid (GA) signaling pathway that represses flowering and modulates greening, in a SOC1-dependent manner (PubMed:20844019, PubMed:23739688, PubMed:25077795). Prevents the accumulation of SOC1 during flowering (PubMed:23739688). Promotes chlorophyll biosynthesis throughout the plant, by regulating chlorophyll biosynthetic genes (e.g. HEMA1 and GUN4) and chloroplast localized glutamate synthase (e.g. GLU1) (PubMed:18417639, PubMed:20844019, PubMed:22102866, PubMed:23878229, PubMed:25077795). Involved in the regulation of sugar-sensing genes (e.g. HXK1, HXK2, STP13 and PLT6) (PubMed:18417639). Regulator of germination, senescence, elongation growth and flowering time (PubMed:20844019, PubMed:22102866, PubMed:23878229). Influences also leaf starch content (PubMed:22102866). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:22102866, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000269|PubMed:25077795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10026556m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by gibberellic acid (GA) (PubMed:20844019). Negatively regulated by AP3/PI (PubMed:18417639). Strong accumulation during cold imbibition of nondormant seeds, but not at warm temperatures. Regulated by PIF transcription factors (PubMed:20844019). Induced by cytokinin (e.g. benzyladenine) (PubMed:22811435). Repressed by HAN (PubMed:23335616). Inhibited by SOC1 (PubMed:23739688). Down-regulated by auxin (2,4D) and auxin response factors (e.g. ARF2 and ARF7) (PubMed:23878229). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088953 | 0.0 | AY088953.1 Arabidopsis thaliana clone 110454 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280600.1 | 0.0 | GATA transcription factor 21 | ||||
Swissprot | Q5HZ36 | 0.0 | GAT21_ARATH; GATA transcription factor 21 | ||||
TrEMBL | R0GQS5 | 0.0 | R0GQS5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280600.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2109 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 1e-176 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10026556m |
Entrez Gene | 17876429 |