PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037666t1
Common NameTCM_037666
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 303aa    MW: 33637.9 Da    PI: 9.2748
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037666t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19171204134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Thecc1EG037666t1 171 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 204
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-19165216IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-12167205No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15169204IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.374169201IPR000679Zinc finger, GATA-type
CDDcd002022.05E-11170198No hitNo description
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
PfamPF003204.7E-17171204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTSSNCYSSL YPFPIDLNED DQHQQHQLFS LKPQPPSLSS SSLTCPILFN PVVQEQAGGH  60
QREPHQHFQY QEDQAKIYVP QDEPLESDSG LNLSLRKKEE GNEHHQIEDS SAKWMSSKMR  120
MMRKMMSSDR ADLSNSSTPK LEEPKQQPSS SPDNSSNSSY NNNDNITIRV CADCNTTKTP  180
LWRSGPRGPK SLCNACGIRQ RKARRAMAAA AAANGAIVAA QTTPTMKSKV QDKSKRSSNS  240
GCVAQLKKKC KHSSQSQGRK KLCFEDLRII LSKNSAFHRV FPQDEKEAAI LLMALSYGLV  300
HG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274746e-35HQ527474.1 Gossypium herbaceum clone NBRI_E_3369 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012845.20.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A061GTJ40.0A0A061GTJ4_THECC; GATA type zinc finger transcription factor family protein, putative
STRINGEOY304640.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-17GATA transcription factor 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]