PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2839_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 313aa    MW: 34938.2 Da    PI: 9.3303
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2839_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19181214134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Neem_2839_f_2 181 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 214
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.545175211IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-19175226IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13175215No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15179214IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.87E-12180212No hitNo description
PfamPF003205.0E-17181214IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTPNYHSPLT PFPLDLKEDQ QNQHLFILNQ ASASYSSSSS ATSSQTFFEP VHQEQGGCYR  60
RESQQLHHSE DQAKIFVSQA AGSCDHPTAM NESDSHLKLS IWKKEERNEN QRENTSVKWM  120
SSKMRLMKKM MNSDAADTPN NCMQKLEDQK QPSSSSLETD HNSCNNINSY SNNTTNTIRV  180
CADCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAIAAA AAAAANGTIL EAHTSSKKNK  240
VQHKDKTSSN NSCLPFKKRC KFTTTPSRGK KNLCFEDLTI ILSKNSAFQR VFPQDEKEAA  300
ILLMALSYGL VHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451458.11e-101putative GATA transcription factor 22
RefseqXP_006475428.11e-101putative GATA transcription factor 22
TrEMBLA0A1Q3CBS61e-104A0A1Q3CBS6_CEPFO; GATA domain-containing protein
STRINGXP_006475428.11e-100(Citrus sinensis)
STRINGXP_006451458.11e-100(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-33cytokinin-responsive gata factor 1