PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3834_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GATA | ||||||||
Protein Properties | Length: 242aa MW: 27073.2 Da PI: 10.7297 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.8 | 8.6e-20 | 85 | 119 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk ++ RrC3834_p4 85 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARQ 119 ********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-17 | 79 | 131 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.38E-12 | 82 | 119 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 83 | 118 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.32E-13 | 84 | 116 | No hit | No description |
PROSITE profile | PS50114 | 12.44 | 85 | 115 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 85 | 110 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.6E-17 | 85 | 119 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVLWKFQTKK FVSNGGGSPS RDQMVPKKET RLKLTIRKKD RHHDHEQVKL MKRKTMIKKT 60 SANQYNIIVN ETGYNGSNNC VIRICSDCNT TKTPLWRSGP RGPKSLCNAC GIRQRKARQA 120 AMAAAGATTN SEYLSPPLLK KKMQSKNKRS NEVSNLYSSL APKVKKCKST NTSMEPVRSG 180 YLENQGKSTM SSSSTSSSLN KFYSDDLAMM LRKSSAYQQV FPQDEKEAAI LLMALSYGMV 240 HG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (PubMed:22102866, PubMed:25077795). Involved in the modulation of chloroplast development, growth and division in a cytokinin-dependent manner (PubMed:22102866, PubMed:22811435). Repressor of the gibberellic acid (GA) signaling pathway that regulates flowering and modulates greening, in a SOC1-dependent manner (PubMed:20844019, PubMed:23739688, PubMed:25077795). Prevents the accumulation of SOC1 during flowering (PubMed:23739688). Promotes chlorophyll biosynthesis throughout the plant, by regulating chlorophyll biosynthetic genes (e.g. HEMA1 and GUN4) and chloroplast localized glutamate synthase (e.g. GLU1) (PubMed:18417639, PubMed:20844019, PubMed:21453984, PubMed:22102866, PubMed:23878229, PubMed:25077795). Involved in the regulation of sugar-sensing genes (e.g. HXK1, HXK2, STP13 and PLT6) (PubMed:18417639). Regulator of germination, senescence, elongation growth and flowering time (PubMed:20844019, PubMed:22102866, PubMed:23878229). Influences also leaf starch content (PubMed:22102866). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:21453984, ECO:0000269|PubMed:22102866, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000269|PubMed:25077795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light (including both red and white lights) (PubMed:17208962, PubMed:17587690). Levels follow a circadian and diurnal rythm, with a peak at 20 hours, thus preempting dawn (PubMed:17208962). Activated by gibberellic acid (GA) (PubMed:20844019). Induced by cytokinin and derivatives (e.g. benzyladenine, t-Zeatin and 6-benzylaminopurine) in light conditions (PubMed:16212609, PubMed:17587690, PubMed:21453984, PubMed:22811435). Triggered by nitrate (PubMed:16262716). Negatively regulated by AP3/PI (PubMed:18417639). Strong accumulation during cold imbibition of nondormant seeds, but not at warm temperatures. Regulated by PIF transcription factors (PubMed:20844019). Repressed by HAN (PubMed:23335616). Inhibited by SOC1 (PubMed:23739688). Down-regulated by auxin (2,4D) and auxin response factors (e.g. ARF2 and ARF7) (PubMed:23878229). {ECO:0000269|PubMed:16212609, ECO:0000269|PubMed:17208962, ECO:0000269|PubMed:17587690, ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:21453984, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000303|PubMed:16262716}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189300 | 3e-61 | AC189300.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028P01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468402.1 | 1e-151 | PREDICTED: putative GATA transcription factor 22 | ||||
Swissprot | Q9SZI6 | 8e-66 | GAT22_ARATH; Putative GATA transcription factor 22 | ||||
TrEMBL | A0A0D3A6I9 | 1e-115 | A0A0D3A6I9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FW13 | 1e-115 | A0A3P6FW13_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g042950.1 | 1e-116 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2109 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 8e-63 | cytokinin-responsive gata factor 1 |