PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g029770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 397aa MW: 44154.4 Da PI: 9.2416 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.4 | 2e-18 | 229 | 262 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + Csa18g029770.1 229 CSGCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 262 9******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-19 | 223 | 275 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-12 | 224 | 262 | No hit | No description |
PROSITE profile | PS50114 | 12.202 | 227 | 259 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.9E-15 | 227 | 262 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.46E-14 | 228 | 260 | No hit | No description |
Pfam | PF00320 | 3.8E-16 | 229 | 262 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLLHHHHQVP SNSSSSSSSI SSLSSYLPFL 60 INSQEDQHVA YNNTYHADHL HLSQPLKAKM FVPNGGSSSS YDHMVPKKET RLKLTIRKKD 120 HEDQTNTLRQ NPTKPDSESD KWLISPKMRL IKKTITNNNQ PTDQTNNNNH KGNDHCPLNQ 180 KTNSEEDQDK DLNIKKVFTR TTTAATTENP YNTINEIGYG NNNGVIRVCS GCNTTKTPLW 240 RSGPRGPKSL CNACGIRQRK ARRAAMAAAA AAGDQEVAVP ARVQQLPLKK KLQNKKKRLN 300 GGDQKYNLSP PVVAKAKKCK IQVEEEEEME VETVPGDSEI SKSTTSSNSS ISSNKFCFDD 360 LTIMLSKSSA YQRVFPQDEK EAAILLMALS YGMVHG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (PubMed:22102866, PubMed:25077795). Involved in the modulation of chloroplast development, growth and division in a cytokinin-dependent manner (PubMed:22102866, PubMed:22811435). Repressor of the gibberellic acid (GA) signaling pathway that represses flowering and modulates greening, in a SOC1-dependent manner (PubMed:20844019, PubMed:23739688, PubMed:25077795). Prevents the accumulation of SOC1 during flowering (PubMed:23739688). Promotes chlorophyll biosynthesis throughout the plant, by regulating chlorophyll biosynthetic genes (e.g. HEMA1 and GUN4) and chloroplast localized glutamate synthase (e.g. GLU1) (PubMed:18417639, PubMed:20844019, PubMed:22102866, PubMed:23878229, PubMed:25077795). Involved in the regulation of sugar-sensing genes (e.g. HXK1, HXK2, STP13 and PLT6) (PubMed:18417639). Regulator of germination, senescence, elongation growth and flowering time (PubMed:20844019, PubMed:22102866, PubMed:23878229). Influences also leaf starch content (PubMed:22102866). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:22102866, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229, ECO:0000269|PubMed:25077795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g029770.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by gibberellic acid (GA) (PubMed:20844019). Negatively regulated by AP3/PI (PubMed:18417639). Strong accumulation during cold imbibition of nondormant seeds, but not at warm temperatures. Regulated by PIF transcription factors (PubMed:20844019). Induced by cytokinin (e.g. benzyladenine) (PubMed:22811435). Repressed by HAN (PubMed:23335616). Inhibited by SOC1 (PubMed:23739688). Down-regulated by auxin (2,4D) and auxin response factors (e.g. ARF2 and ARF7) (PubMed:23878229). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:20844019, ECO:0000269|PubMed:22811435, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:23739688, ECO:0000269|PubMed:23878229}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088953 | 0.0 | AY088953.1 Arabidopsis thaliana clone 110454 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483172.1 | 0.0 | PREDICTED: GATA transcription factor 21-like | ||||
Swissprot | Q5HZ36 | 0.0 | GAT21_ARATH; GATA transcription factor 21 | ||||
TrEMBL | R0GQS5 | 0.0 | R0GQS5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010483172.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2109 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 1e-164 | GATA family protein |