PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM3828
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Subtree rooted at node 88: /---------- Csa20g038010.1 [Camelina sativa] (2) | | /----- Carubv10002155m [Capsella rubella] (17) |-100+ /-98-+ \----- Cagra.5163s0007.1.p [Capsella grandiflora] (60) | | | |---------- Csa13g027700.1 [Camelina sativa] (42) | | | \---------- Csa08g017450.1 [Camelina sativa] (54) | /-100-+ /----- AT5G23090.1 [Arabidopsis thaliana] (12) | | | | |---100---+----- 489163 [Arabidopsis lyrata] (37) | | | /--------------94--------------+ | \----- Araha.7271s0001.1.p [Arabidopsis halleri] (40) | | | | | \--------------- Bostr.10199s0135.1.p [Boechera stricta] (50) | | | \--------------------- Thhalv10005056m [Eutrema salsugineum] (36) | | /------------------------------- Csa20g011590.1 [Camelina sativa] (5) | | | | /----- XP_013612245.1 [Brassica oleracea] (10) | | | | | |----- XP_013612243.1 [Brassica oleracea] (30) | | /-69-+ | | | |----- GSBRNA2T00015960001 [Brassica napus] (49) | | | | | | /-92-+ \----- XP_013600317.1 [Brassica oleracea] (52) | /-68-+ | | | | | | \---------- GSBRNA2T00071657001 [Brassica napus] (55) | | | /--97-+ | | | | | /----- GSBRNA2T00136053001 [Brassica napus] (11) | | | | \---100---+ | | | | \----- XP_009122430.1 [Brassica rapa] (56) | | | /-92-+ | | | | |--------------------- Rsa1.0_00058.1_g00021.1 [Raphanus sativus] (16) | | | | | | | \-59-+ \--------------------- RrC69_p3 [Raphanus raphanistrum] (45) /-96-+ | | | | | | /----- Csa13g010210.1 [Camelina sativa] (23) | | | \---------72---------+ | | | \----- Csa08g056180.1 [Camelina sativa] (46) | | | | | |------------------------------------ Araha.21147s0009.1.p [Arabidopsis halleri] (8) | | | | | | /--------------------- Tp6g34750 [Thellungiella parvula] (15) | | | | | | /-99-+ | /----- GSBRNA2T00080759001 [Brassica napus] (19) | | | | | /-100+ | | | |------61------+ | \----- XP_013619027.1 [Brassica oleracea] (35) | | | | | /-54-+ | | | | | | \---------- XP_009131043.1 [Brassica rapa] (32) | | | | \--66-+ | | | | \--------------- 676744148 [Sisymbrium irio] (34) | | | | | | | |------------------------------------ Carubv10002152m [Capsella rubella] (18) /-98-+ | | | | | | /-100+ |------------------------------------ Thhalv10014894m [Eutrema salsugineum] (20) | | | | | | | | | | | |------------------------------------ AT5G08190.1 [Arabidopsis thaliana] (24) | | | | | | | | | | | |------------------------------------ 487654 [Arabidopsis lyrata] (28) | | | | | | | | \--98-+ | |------------------------------------ Cagra.1365s0026.1.p [Capsella grandiflora] (29) | | | | | | | | | \------------------------------------ Bostr.13129s0145.1.p [Boechera stricta] (53) | | | | | | | \----------------------------------------- AA44G00145 [Aethionema arabicum] (44) | | | | | \---------------------------------------------- AA5G00203 [Aethionema arabicum] (31) | | --98-+ | /--------------------- 676729476 [Sisymbrium irio] (7) | | | | | | /----- RrC3968_p2 [Raphanus raphanistrum] (14) | \-----------------82----------------+ /----99---+ | | | \----- Rsa1.0_00056.1_g00045.1 [Raphanus sativus] (33) | | | | \--55-+ /----- XP_009111957.1 [Brassica rapa] (25) | | /-63-+ | | | \----- GSBRNA2T00094725001 [Brassica napus] (39) | \-94-+ | | /----- XP_013606047.1 [Brassica oleracea] (41) | \-65-+ | \----- GSBRNA2T00146111001 [Brassica napus] (48) | \-------------------------------------------------------------- Tp2g24030 [Thellungiella parvula] (58) Root part of tree: /------------------------------------------------------------------- Cotton_A_18601_BGI-A2_v1.0 [Gossypium arboreum] (1) | |------------------------------------------------------------------- Gorai.001G064700.1 [Gossypium raimondii] (3) | |------------------------------------------------------------------- Gh_D07G0570 [Gossypium hirsutum] (6) | |------------------------------------------------------------------- Gh_A07G0500 [Gossypium hirsutum] (21) | | /------------------- (88) | | | /---100---+ /---------- XP_010522258.1 [Tarenaya hassleriana] (13) | | \---97---+ | /---57---+ \---------- XP_010547721.1 [Tarenaya hassleriana] (43) | | | + | \----------------------------- evm.model.supercontig_13.75 [Carica papaya] (27) | | | | /------------------- Neem_1059_f_2 [Azadirachta indica] (26) | /----99---+ | | | |--------100-------+ /---------- Ciclev10022641m [Citrus clementina] (51) | | | \---100--+ | | | \---------- orange1.1g031569m [Citrus sinensis] (59) | | | | /---99---+ \-------------------------------------- Eucgr.B00669.1.p [Eucalyptus grandis] (47) | | | | | | /---------- Cotton_A_09663_BGI-A2_v1.0 [Gossypium arboreum] (4) | | | | | | | |---------- Gorai.006G269400.1 [Gossypium raimondii] (9) \---100---+ \-----------------100-----------------+ | |---------- Gh_A09G2163 [Gossypium hirsutum] (38) | | | \---------- Gh_D09G2370 [Gossypium hirsutum] (57) | \--------------------------------------------------------- Thecc1EG014477t1 [Theobroma cacao] (22) |