PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.001G064700.1 | ||||||||
Common Name | B456_001G064700, LOC105786810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 157aa MW: 17366.7 Da PI: 4.4199 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 75.3 | 9.2e-24 | 11 | 93 | 3 | 85 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ + Gorai.001G064700.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALEVLGFGKYIEEVYA 93 6899***************************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-39 | 8 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.45E-36 | 12 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.3E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNREDKRTI APEHVLKALE VLGFGKYIEE VYAAYEQHKI ETLQDSLKGG KWSNGAEMTE 120 EEAVAEQQRM FAEARARMNG GAVAPKQPDP DPSLES* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-35 | 12 | 135 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468741.1 | 1e-113 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_016744144.1 | 1e-113 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_017623272.1 | 1e-113 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 4e-92 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0B0MXM4 | 1e-111 | A0A0B0MXM4_GOSAR; Protein Dr1-like protein | ||||
TrEMBL | A0A0D2LS17 | 1e-111 | A0A0D2LS17_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8P1Q5 | 1e-111 | A0A1U8P1Q5_GOSHI; protein Dr1 homolog isoform X1 | ||||
STRING | Gorai.001G064700.1 | 1e-112 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3828 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23090.2 | 2e-94 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.001G064700.1 |
Entrez Gene | 105786810 |
Publications ? help Back to Top | |||
---|---|---|---|
|