PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA44G00145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NF-YB | ||||||||
Protein Properties | Length: 162aa MW: 18152.4 Da PI: 4.2836 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 77 | 2.7e-24 | 11 | 103 | 3 | 93 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl.kvyl.kkyrel 93 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +v+se+++ c++e+++ti+++ +l al lGf +yv ++ ++y +ky + AA44G00145 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVGEVyDAYEqHKYETM 103 6899**************************************************************************776356641455554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.3E-39 | 8 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.64E-35 | 12 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.0E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCNKEDKRTI APEHVLKALQ VLGFGEYVGE VYDAYEQHKY ETMQDSQRSV KMNSGTEMTE 120 EEAAAEQQRM FAEARARMNG GIAVPQTDQL ETEQSQSNNL QS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-35 | 12 | 135 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA44G00145 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455118.1 | 1e-101 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_018457260.1 | 1e-101 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 1e-101 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | V4KWV8 | 5e-99 | V4KWV8_EUTSA; Uncharacterized protein | ||||
STRING | XP_010454589.1 | 1e-100 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3828 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 7e-84 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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