PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3968_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 163aa    MW: 18358.6 Da    PI: 4.3755
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3968_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB79.83.7e-2511105395
       NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkkyreleg 95 
                 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al  lGf +y+e++ + y  +ky  +++
  RrC3968_p2  11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEDRRTIAPEHVLKALQVLGFGEYIEEVYAaYeQHKYETMDT 105
                 6899***************************************************************************9865142356766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.2E-408138IPR009072Histone-fold
SuperFamilySSF471134.03E-3512139IPR009072Histone-fold
PfamPF008082.4E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCNKEDRRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY ETMDTQRSVK CNSGAQMTEE  120
EAAAEQQRMF AEARARMNGG GPVPQPEHPE TEQPETDQRN LQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-341213412133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174601e-170AK317460.1 Arabidopsis thaliana AT5G23090 mRNA, complete cds, clone: RAFL23-07-M17.
GenBankATHDR1B1e-170D38110.1 Arabidopsis thaliana mRNA for Dr1, complete cds.
GenBankAY0577091e-170AY057709.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
GenBankAY1169601e-170AY116960.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455119.11e-119PREDICTED: protein Dr1 homolog isoform X2
RefseqXP_018457261.11e-119PREDICTED: protein Dr1 homolog isoform X2
SwissprotP495921e-104NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A397XRG31e-112A0A397XRG3_BRACM; Uncharacterized protein
TrEMBLM4F4F91e-112M4F4F9_BRARP; Uncharacterized protein
STRINGBra035959.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-80nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]