PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g038010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YB | ||||||||
Protein Properties | Length: 159aa MW: 17813.1 Da PI: 4.5241 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 78.1 | 1.2e-24 | 11 | 105 | 3 | 95 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkkyreleg 95 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se++d c++e+++ti+++ +l al lGf +y+e++ + y +ky +++ Csa20g038010.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAaYeQHKYETMDT 105 6899***************************************************************************9865142356766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.0E-40 | 8 | 138 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.26E-35 | 12 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-21 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND 60 VCNKEDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY ETMDTQRSVK WNSGAQMTEE 120 EAAAEQQRMF AEARARMNGG VPVPQPEHPE TNQRSPQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-34 | 12 | 134 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g038010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317460 | 0.0 | AK317460.1 Arabidopsis thaliana AT5G23090 mRNA, complete cds, clone: RAFL23-07-M17. | |||
GenBank | ATHDR1B | 0.0 | D38110.1 Arabidopsis thaliana mRNA for Dr1, complete cds. | |||
GenBank | AY057709 | 0.0 | AY057709.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds. | |||
GenBank | AY116960 | 0.0 | AY116960.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421108.1 | 1e-116 | PREDICTED: protein Dr1 homolog isoform X2 | ||||
Refseq | XP_010493422.1 | 1e-116 | PREDICTED: protein Dr1 homolog isoform X2 | ||||
Swissprot | P49592 | 1e-112 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | V4KPH0 | 1e-113 | V4KPH0_EUTSA; Uncharacterized protein | ||||
STRING | XP_010421107.1 | 1e-114 | (Camelina sativa) | ||||
STRING | XP_010493421.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3828 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-96 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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