PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002152m
Common NameCARUB_v10002152mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YB
Protein Properties Length: 161aa    MW: 17961.3 Da    PI: 4.4037
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002152mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB78.78.2e-2511102392
            NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkkyre 92 
                      ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al  lGf +yve++ + y  +ky  
  Carubv10002152m  11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAaYeQHKYET 102
                      6899***************************************************************************9865142345544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.1E-408139IPR009072Histone-fold
SuperFamilySSF471135.93E-3612142IPR009072Histone-fold
PfamPF008087.1E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE  60
VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY ETMQDSQRSV KMNSGAEMTE  120
EEAAAEQQRM FAEARARMNG GVSVPQPKQL EETQQTSLQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-351213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002152m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4284000.0AF428400.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.
GenBankAK2271640.0AK227164.1 Arabidopsis thaliana mRNA for DR1-like protein, complete cds, clone: RAFL09-87-H07.
GenBankAY0870170.0AY087017.1 Arabidopsis thaliana clone 30536 mRNA, complete sequence.
GenBankAY1255440.0AY125544.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288817.11e-116protein Dr1 homolog
SwissprotP495921e-104NC2B_ARATH; Protein Dr1 homolog
TrEMBLR0H9R51e-114R0H9R5_9BRAS; Uncharacterized protein
STRINGXP_006288817.11e-115(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-76nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]