PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5163s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YB
Protein Properties Length: 161aa    MW: 18027.3 Da    PI: 4.5241
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5163s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB77.61.7e-2411102392
                NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkky 90 
                          ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se++d c++e+++ti+++ +l al  lGf +y+e++ + y  +ky
  Cagra.5163s0007.1.p  11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAaYeQHKY 100
                          6899***************************************************************************98651413455 PP

                NF-YB  91 re 92 
                            
  Cagra.5163s0007.1.p 101 ET 102
                          44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-398139IPR009072Histone-fold
SuperFamilySSF471131.71E-3512140IPR009072Histone-fold
PfamPF008081.1E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND  60
VCNKEDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY ETMQDTQRSV KWNSGAQMTE  120
EEAAAEQQRM FAEARARMNG GGPVPQPEQH PETNQRSPQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B6e-341213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5163s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174600.0AK317460.1 Arabidopsis thaliana AT5G23090 mRNA, complete cds, clone: RAFL23-07-M17.
GenBankATHDR1B0.0D38110.1 Arabidopsis thaliana mRNA for Dr1, complete cds.
GenBankAY0577090.0AY057709.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
GenBankAY1169600.0AY116960.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635732.11e-116protein Dr1 homolog isoform X1
RefseqXP_023635733.11e-116protein Dr1 homolog isoform X1
SwissprotP495921e-112NC2B_ARATH; Protein Dr1 homolog
TrEMBLR0HD871e-115R0HD87_9BRAS; Uncharacterized protein
STRINGCagra.5163s0007.1.p1e-117(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.23e-94nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]