PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G269400.1

Common Name

B456_006G269400, LOC105800810

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 157aa MW: 17442.8 Da PI: 4.3877

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G269400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	74.3	1.9e-23	11	94	3	86
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ + Gorai.006G269400.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAA 94 6899***************************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.1E-39	8	140	IPR009072	Histone-fold
SuperFamily	SSF47113	5.16E-35	12	143	IPR009072	Histone-fold
Pfam	PF00808	1.4E-20	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLISSESNE 60 VCNREEKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKI ETMHDSLKGG KWSNGAEMTE 120 EEAAAEQQRM FAEARARMNG GAVVPKQPES DPSLES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	5e-34	12	135	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487607.1	1e-113	PREDICTED: protein Dr1 homolog
Refseq	XP_016718908.1	1e-113	PREDICTED: protein Dr1 homolog
Refseq	XP_017608381.1	1e-113	PREDICTED: protein Dr1 homolog
Swissprot	P49592	3e-93	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A0B0PYP1	1e-111	A0A0B0PYP1_GOSAR; Protein Dr1-like protein
TrEMBL	A0A0D2NZ27	1e-111	A0A0D2NZ27_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LZT3	1e-111	A0A1U8LZT3_GOSHI; protein Dr1 homolog
TrEMBL	A0A2P5VRP0	1e-111	A0A2P5VRP0_GOSBA; Uncharacterized protein
STRING	Gorai.006G269400.1	1e-112	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3828	26	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	7e-76	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Gorai.006G269400.1
Entrez Gene	105800810

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]