PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC69_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 164aa MW: 18418.6 Da PI: 4.2416 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 78.6 | 8.7e-25 | 11 | 102 | 3 | 92 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkkyre 92 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al lGf +yve++ + y +ky RrC69_p3 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAaYeQHKYET 102 6899***************************************************************************9865142345544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-39 | 8 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.93E-36 | 12 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.5E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY ETMQDSQRSV KMNSGAEMTE 120 EEAAAEQQRM FAEARARMNG GVSVPQPDQE QQVDDNTQQS NLQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-35 | 12 | 135 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF428400 | 1e-150 | AF428400.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds. | |||
GenBank | AK227164 | 1e-150 | AK227164.1 Arabidopsis thaliana mRNA for DR1-like protein, complete cds, clone: RAFL09-87-H07. | |||
GenBank | AY087017 | 1e-150 | AY087017.1 Arabidopsis thaliana clone 30536 mRNA, complete sequence. | |||
GenBank | AY125544 | 1e-150 | AY125544.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443876.1 | 1e-119 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 1e-103 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A1J3JK73 | 1e-105 | A0A1J3JK73_NOCCA; Protein Dr1-like protein | ||||
STRING | XP_006288820.1 | 1e-103 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3828 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08190.1 | 2e-74 | nuclear factor Y, subunit B12 |
Publications ? help Back to Top | |||
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