PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2168
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Subtree rooted at node 115: /----- Gorai.008G064100.1 [Gossypium raimondii] (2) /-100+ | \----- Gh_D12G0577 [Gossypium hirsutum] (45) /-100+ | \---------- Gh_A12G0561 [Gossypium hirsutum] (29) /-100-+ | | /----- Gorai.003G011200.1 [Gossypium raimondii] (56) | \---100---+ | \----- Gh_A02G1620 [Gossypium hirsutum] (65) | /-78-+ /----- Gh_A11G1640 [Gossypium hirsutum] (44) | | | | | /-100+----- Gh_D11G1798 [Gossypium hirsutum] (51) | | | | /-74-+ \----100---+ \----- Gorai.007G196900.1 [Gossypium raimondii] (57) | | | | | \---------- Cotton_A_19331_BGI-A2_v1.0 [Gossypium arboreum] (63) | | | \-------------------------- Thecc1EG000244t1 [Theobroma cacao] (43) | /-95-+ /----- Cotton_A_24186_BGI-A2_v1.0 [Gossypium arboreum] (11) | | /-57-+ | | | \----- Gh_A10G0877 [Gossypium hirsutum] (13) | | /-99-+ /-82-+ | | \---------- Cotton_A_24189_BGI-A2_v1.0 [Gossypium arboreum] (39) | | \------100------+ | | \--------------- Gh_D10G0876 [Gossypium hirsutum] (59) /-60-+ | | | \------------------------------------ Eucgr.I02368.1.p [Eucalyptus grandis] (17) | | /------100------+ \----------------------------------------- evm.model.supercontig_6.219 [Carica papaya] (49) | | | \---------------------------------------------- Eucgr.I01328.1.p [Eucalyptus grandis] (41) | | /----- Cagra.2961s0033.1.p [Capsella grandiflora] (4) | /-100+ | | \----- Carubv10024193m [Capsella rubella] (38) | | | /-58-+---------- 900546 [Arabidopsis lyrata] (9) | | | | | \---------- AT2G21320.1 [Arabidopsis thaliana] (12) | | | |--------------- Csa07g051490.1 [Camelina sativa] (7) | /-100-+ | | |--------------- Bostr.9227s0001.1.p [Boechera stricta] (16) | | | | | |--------------- Csa16g043110.1 [Camelina sativa] (31) | /-63-+ | | | | \--------------- Csa09g085690.1 [Camelina sativa] (66) | | | | /-92-+ \--------------------- Thhalv10000319m [Eutrema salsugineum] (18) | | | | | | /----- Tp4g00500 [Thellungiella parvula] (25) | | \---------51---------+ | | \----- 676748238 [Sisymbrium irio] (26) | /------100-----+ | | | /---------- XP_009117418.1 [Brassica rapa] (14) | | | | | | | | /----- GSBRNA2T00136998001 [Brassica napus] (24) | | \---------89---------+-97-+ | | | \----- XP_013605174.1 [Brassica oleracea] (40) | | | | | \---------- Rsa1.0_04954.1_g00002.1 [Raphanus sativus] (27) | | | | /------------------------------------ RrC4676_p4 [Raphanus raphanistrum] (5) | | | | | | /----- XP_013595857.1 [Brassica oleracea] (8) | | | /---100---+ --98-+ | | | \----- GSBRNA2T00100324001 [Brassica napus] (19) | | | | | | |---------100--------+ /---------- XP_009101911.1 [Brassica rapa] (15) | | | | | | | | \-54-+ /----- RrC1470_p3 [Raphanus raphanistrum] (55) | | | \-100+ | | | \----- Rsa1.0_00211.1_g00035.1 [Raphanus sativus] (62) | /-100-+ | | | | | /-------------------------- 676743836 [Sisymbrium irio] (20) | | | | | | | | | | /----- Cagra.1383s0073.1.p [Capsella grandiflora] (22) | | | | | /----99---+ | | | | | | \----- Carubv10005832m [Capsella rubella] (37) | | | | | | | | | /-70-+ | | /----- Araha.16804s0003.1.p [Arabidopsis halleri] (28) | | | | | | | /-91-+ | | | | | /-89-+ | | \----- 912349 [Arabidopsis lyrata] (61) | | | | | | | |-98-+ | | | | | | | /--91-+ \---------- AT4G38960.3 [Arabidopsis thaliana] (36) | | | | | | | | | | | | | | | | | | /----- Csa12g001740.1 [Camelina sativa] (35) | | | | | | | | | | | | | | | | | | | /-100+----- Csa10g001670.1 [Camelina sativa] (47) | | | | |-99-+ \-88-+ | | | | | | | | | | \-71-+ \----- Csa11g001840.1 [Camelina sativa] (64) | | | | | | | | | /-100+ \-97-+ | | | \---------- Bostr.25542s0079.1.p [Boechera stricta] (69) | | | | | | | | | | | | | \--------------------- Tp7g36880 [Thellungiella parvula] (30) | | | | | | | | | | | \------------------------------- Thhalv10026348m [Eutrema salsugineum] (42) | | | | | | | | | \------------------------------------ Rsa1.0_00944.1_g00009.1 [Raphanus sativus] (34) | | | | | | | | /----- XP_013626311.1 [Brassica oleracea] (10) | | | | /-100+ | | | | | \----- GSBRNA2T00061090001 [Brassica napus] (46) \-97-+ | \--------------99--------------+ | | | /----- GSBRNA2T00150880001 [Brassica napus] (23) | | \-66-+ | | \----- XP_009109512.1 [Brassica rapa] (68) | | | | /----- XP_010555260.1 [Tarenaya hassleriana] (52) | | | | \----------------------97----------------------+----- XP_010531479.1 [Tarenaya hassleriana] (54) | | | \----- XP_010526583.1 [Tarenaya hassleriana] (58) | \--------------------------------------------------------- evm.model.supercontig_150.19 [Carica papaya] (50) Root part of tree: /------------------------------------------------------------------- Thecc1EG006783t1 [Theobroma cacao] (1) | | /--------------------------------- (115) | | |---------------100---------------+ /----------------- orange1.1g028487m [Citrus sinensis] (48) | \------100------+ | \----------------- Ciclev10029284m [Citrus clementina] (60) | + /----------------- Cotton_A_19761_BGI-A2_v1.0 [Gossypium arboreum] (3) | /------100------+ | | \----------------- Gh_A13G0274 [Gossypium hirsutum] (53) | /-------100------+ | | | /----------------- Gh_D13G0293 [Gossypium hirsutum] (21) | | \-------98------+ | | \----------------- Gorai.013G032300.1 [Gossypium raimondii] (32) \-------63-------+ | /----------------- Gorai.002G004200.1 [Gossypium raimondii] (6) | | \---------------100--------------+----------------- Cotton_A_00234_BGI-A2_v1.0 [Gossypium arboreum] (33) | \----------------- Gh_D01G0033 [Gossypium hirsutum] (67) |