PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006783t1 | ||||||||
Common Name | TCM_006783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | DBB | ||||||||
Protein Properties | Length: 262aa MW: 29305.1 Da PI: 8.0191 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.7 | 1e-07 | 51 | 81 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C+ +e+ ++lfC ++ lC++C ++ H Thecc1EG006783t1 51 TLCDVCESAAAILFCAADEAALCRSCDEKVH 81 68**************************998 PP | |||||||
2 | zf-B_box | 28 | 4.4e-09 | 100 | 139 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H Thecc1EG006783t1 100 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 139 5799**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.296 | 48 | 95 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-10 | 48 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.03E-6 | 51 | 93 | No hit | No description |
Pfam | PF00643 | 4.4E-6 | 51 | 82 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.973 | 99 | 144 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.4E-10 | 99 | 144 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-7 | 100 | 133 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.73E-7 | 102 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MKKEEKEVED KWRVRDLHTA AIFRSVEECL RSEERRSKRE ANRKKKNRMR TLCDVCESAA 60 AILFCAADEA ALCRSCDEKV HMCNKLASRH VRVGLADPSD VPRCDICENA PAFFYCEVDG 120 SSLCLQCDMI VHVGGKRTHG RYLLLRQRVE FPGDKPGRLD ELGLQTLDPN EVRKDKNQQQ 180 PKLAARENQQ NHRVSPVPVL DGNSDGDGKV GNKLIDLNAK PQRVHGQAST NQEQGMDISS 240 GNNHDSSSVV PVGSFKREPD K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970899.1 | 1e-157 | PREDICTED: B-box zinc finger protein 19 | ||||
Swissprot | C0SVM5 | 1e-90 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A061E6F9 | 0.0 | A0A061E6F9_THECC; B-box type zinc finger family protein | ||||
STRING | EOX97858 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2168 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 5e-93 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006783t1 |
Entrez Gene | 18607689 |
Publications ? help Back to Top | |||
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