PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00100324001

Common Name

GSBRNA2T00100324001, LOC106409082

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

DBB

Protein Properties

Length: 180aa MW: 19651 Da PI: 6.1406

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00100324001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.5	2.4e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H GSBRNA2T00100324001 4 LCDACENAAAIVFCAADEAALCRACDEKVH 33 6*****9****************998 PP
2	zf-B_box	26.7	1.1e-08	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++++C+ +e+ ++ ++Ce +++ lC +C + H g H GSBRNA2T00100324001 52 NAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91 789***************************9996555556 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.338	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.51E-6	3	45	No hit	No description
Pfam	PF00643	6.2E-6	4	42	IPR000315	B-box-type zinc finger
SMART	SM00336	4.6E-7	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	2.2E-12	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.916	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	2.10E-7	56	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MRILCDACEN AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDDKPK PNNTRDNLQN 120 QRVSASANGE ANGKTTDDEM IDLNSNPQRA SSNNHGIDVH NTNNHETPGV VPFKREPEK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22075	0.0	flower

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00100324001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493728	1e-139	AB493728.1 Arabidopsis thaliana At4g38960 mRNA for hypothetical protein, partial cds, clone: RAAt4g38960.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595857.1	1e-131	PREDICTED: B-box zinc finger protein 19-like
Refseq	XP_013705219.1	1e-131	B-box zinc finger protein 19-like
Swissprot	C0SVM5	1e-109	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A0D3DIF0	1e-129	A0A0D3DIF0_BRAOL; Uncharacterized protein
STRING	Bo7g119480.1	1e-130	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	1e-112	DBB family protein

Link Out ? help Back to Top
Entrez Gene	106409082

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]