PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555260.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 195aa    MW: 21537.2 Da    PI: 6.021
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.6e-08433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC++C ++ H
  XP_010555260.1  4 LCDACESAAAILFCAADEAALCRSCDEKVH 33
                    6**************************998 PP
2zf-B_box27.85.2e-095291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    ++++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_010555260.1 52 DAPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                    679***************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48147IPR000315B-box-type zinc finger
CDDcd000211.60E-6345No hitNo description
SMARTSM003364.1E-7447IPR000315B-box-type zinc finger
PfamPF006434.5E-6442IPR000315B-box-type zinc finger
SMARTSM003361.1E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1015196IPR000315B-box-type zinc finger
PfamPF006436.1E-75291IPR000315B-box-type zinc finger
CDDcd000218.82E-85496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRILCDACES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDAPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPGR ATELGLQHKE  120
QNSPNQKMSL QEQNANADND DGKVENKLID LNANPMRLHD TASNNQEHGI DVNNTNNHES  180
ASVVPVGHFK REPEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555260.11e-144PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM56e-96BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1R3HYV41e-104A0A1R3HYV4_9ROSI; Zinc finger, B-box
STRINGXP_010555260.11e-143(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-98DBB family protein