PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_150.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family DBB
Protein Properties Length: 226aa    MW: 24624.9 Da    PI: 5.8419
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_150.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.2e-07333434
                      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                                  ++C+ +e+  +  fC  ++  lC +C ++ H
  evm.model.supercontig_150.19  3 TICDACESAAAVVFCAADEAALCSSCDEKVH 33
                                  68***************************99 PP
2zf-B_box29.31.7e-095291237
                      zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                                  + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  evm.model.supercontig_150.19 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMVVHVGgkrtH 91
                                  5799**************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.552147IPR000315B-box-type zinc finger
SMARTSM003367.7E-7147IPR000315B-box-type zinc finger
PfamPF006431.0E-5345IPR000315B-box-type zinc finger
CDDcd000216.72E-7347No hitNo description
SuperFamilySSF578458.01E-55093No hitNo description
SMARTSM003363.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.15851103IPR000315B-box-type zinc finger
PfamPF006439.9E-85291IPR000315B-box-type zinc finger
CDDcd000211.27E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRTICDACES AAAVVFCAAD EAALCSSCDE KVHMCNKLAS RHVRVKLADP SDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD MVVHVGGKRT HGRYLLLRQR VELLDKAGHL EELGPKSLDQ  120
NEATRDQREP PKLTARENHQ NHQLSSVPVL GDNVNTDADA DGKVDNKLID LNEKPQRVLG  180
QASTNGVRFS QSILLLSMCV DVINGNNHEA ASVVPVGSFK RELDK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_150.19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889285.11e-152B-box zinc finger protein 19
RefseqXP_021889286.11e-152B-box zinc finger protein 19
RefseqXP_021889287.11e-152B-box zinc finger protein 19
RefseqXP_021889289.11e-152B-box zinc finger protein 19
SwissprotC0SVM51e-79BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A067JUK01e-111A0A067JUK0_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_150.191e-165(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.18e-68DBB family protein