PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19331_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 209aa    MW: 22961 Da    PI: 6.6568
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19331_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.79.9e-08333434
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                                ++C+ +e+  ++ fC  ++  lC  C ++ H
  Cotton_A_19331_BGI-A2_v1.0  3 TICDACESAAAIVFCAADEAALCGACDEKVH 33
                                68**************************998 PP
2zf-B_box26.51.3e-085291237
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                                + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Cotton_A_19331_BGI-A2_v1.0 52 DVPRCDICENAPAFFYCEIDGTSLCLQCDMIVHVGgkrtH 91
                                5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
CDDcd000211.54E-5345No hitNo description
PfamPF006433.2E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578456.18E-54887No hitNo description
PROSITE profilePS501198.835196IPR000315B-box-type zinc finger
SMARTSM003363.1E-105196IPR000315B-box-type zinc finger
PfamPF006431.2E-65285IPR000315B-box-type zinc finger
CDDcd000213.34E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRTICDACES AAAIVFCAAD EAALCGACDE KVHLCNKLAG RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGTSLCLQCD MIVHVGGKRT HGRYLVLRQR VEFPGYKPGN IEDPASQPLD  120
PSETMRGQNH AAKRTVGENQ QNDKASPVLR MDANADGHLE TGTKMIDLNM KPHRIHGQAS  180
NNQHQPEKLD MKTWQKDAKD ISEVHSSVP
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628420.11e-136PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM57e-70BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1U8K8H31e-134A0A1U8K8H3_GOSHI; B-box zinc finger protein 18-like isoform X1
STRINGGorai.007G196900.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-72DBB family protein