PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024193m
Common NameCARUB_v10024193mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family DBB
Protein Properties Length: 168aa    MW: 18171.3 Da    PI: 5.7601
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024193mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-06434535
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                      C+ +e+  ++ fC  ++  lC +C ++ Hk
  Carubv10024193m  4 LCDACESAAAIVFCAADEAALCCSCDEKVHK 34
                     6***************************995 PP
2zf-B_box27.66.1e-095292238
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     +++ C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Carubv10024193m 52 NAPSCDICENAPAFFYCEIDGSSLCLQCDMLVHVGgkrtHR 92
                     7899***************************9966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000214.12E-5334No hitNo description
SMARTSM003363.0E-5447IPR000315B-box-type zinc finger
SMARTSM003366.6E-135196IPR000315B-box-type zinc finger
PROSITE profilePS501199.25196IPR000315B-box-type zinc finger
PfamPF006435.8E-75292IPR000315B-box-type zinc finger
CDDcd000219.30E-85496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRILCDACES AAAIVFCAAD EAALCCSCDE KVHKCNKLAS RHLRVGLADP SNAPSCDICE  60
NAPAFFYCEI DGSSLCLQCD MLVHVGGKRT HRRFLLLRQR IEFPGDKPNH ADQLGLRCQK  120
GSSGGGQEAN GNGDHDHNMI DLNSNPQRVH QDEGIDVNGA NNHEPQE*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024193m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605701e-178AY060570.1 Arabidopsis thaliana At2g21320/F3K23.8 mRNA, complete cds.
GenBankAY1255731e-178AY125573.1 Arabidopsis thaliana At2g21320/F3K23.8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295119.11e-120B-box zinc finger protein 18
RefseqXP_023641009.11e-120B-box zinc finger protein 18
SwissprotQ9SJU51e-112BBX18_ARATH; B-box zinc finger protein 18
TrEMBLR0FYD51e-119R0FYD5_9BRAS; Uncharacterized protein
STRINGXP_006295119.11e-120(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.11e-114DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]