PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526583.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 200aa    MW: 21905.7 Da    PI: 7.1329
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC++C ++ H
  XP_010526583.1  4 LCDACESAGAILFCAADEAALCRSCDEKVH 33
                    6**************************998 PP
2zf-B_box26.71.2e-085394340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvv 40
                    ++ C+ +e+ ++ ++Ce +++ lC +C +  H g    H +v
  XP_010526583.1 53 APSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtHGRV 94
                    578*****************************7667788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.281147IPR000315B-box-type zinc finger
CDDcd000211.29E-5345No hitNo description
PfamPF006431.1E-5434IPR000315B-box-type zinc finger
SMARTSM003361.2E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1865196IPR000315B-box-type zinc finger
SMARTSM003368.9E-135196IPR000315B-box-type zinc finger
PfamPF006431.2E-65394IPR000315B-box-type zinc finger
CDDcd000217.81E-85496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRILCDACES AGAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SHAPSCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRVLLLRQR VEFPGDKSGR VTEPGLQHKE  120
QNRARENSPN QNKSPACRQE PTADAQPGRK VENKLIDLNA KPQRIHEPAS YNQEQGIDVN  180
NNLENANAVH VGPFRGGPEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526583.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526583.11e-146PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM52e-85BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1R3HYV44e-92A0A1R3HYV4_9ROSI; Zinc finger, B-box
STRINGXP_010526583.11e-146(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-87DBB family protein