PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004777t1
Common NameTCM_004777
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 422aa    MW: 47606 Da    PI: 4.5297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004777t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +grWTteEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Thecc1EG004777t1 14 KGRWTTEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding57.14.1e-1867112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T+eE+el++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Thecc1EG004777t1  67 RGNITAEEEELIINLHATLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                       7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.749961IPR017930Myb domain
SuperFamilySSF466891.58E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002494.6E-141461IPR001005SANT/Myb domain
CDDcd001676.41E-81661No hitNo description
PROSITE profilePS5129426.38662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2665116IPR009057Homeodomain-like
SMARTSM007177.0E-1866114IPR001005SANT/Myb domain
PfamPF002493.5E-1667112IPR001005SANT/Myb domain
CDDcd001671.03E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTTE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TAEEEELIIN LHATLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIHSFR  120
RPSCQSLPVI LDMTKAGIAK RKGGRTNRWE MKKTKSYSTQ EDDGSSSQKT VENVSVNEVV  180
PLPSTPILEK ETLSTTAIED RMVLDPYGED KERMIPVRTS PCQDTGEGML GSSEERERLV  240
PMSSSGEERT IENSMLCPSG NAETETDIAP FESIESGGML CFNDIMDNEL LEPNGDLTLS  300
EWGENKVTVN VEERENSGIL SPNKTAANNE EIESGNLSSN VDCGDLNSCS SITSCFVDEC  360
NIDNNLDWDW ERVVQGNELW DEKEYMPSWL WESDDDGKGE RHKLEDKDFK RQNSLVAWLF  420
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-23121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-231211656159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-231211656159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-231211625128MYB TRANSFORMING PROTEIN
1mse_C2e-23121162105C-Myb DNA-Binding Domain
1msf_C2e-23121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051069.10.0PREDICTED: transcription factor MYB12
TrEMBLA0A061DT340.0A0A061DT34_THECC; MYB-like DNA-binding domain protein
STRINGEOX952260.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.15e-77myb domain protein 12
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]