PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 31926.8 Da PI: 9.233 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl PK06182.1 14 KGRWTSEEDEILTKYIQSNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.5e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++++++++ lG++ W++Ia++++ gRt++++k++w+++l PK06182.1 67 RGNISSEEEDIIINLHSTLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.942 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.8 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.94E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGRAPCCEKI GLKKGRWTSE EDEILTKYIQ SNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SSEEEDIIIN LHSTLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIHTFR 120 RCNTTHHIHR DQAPTTLPNL VAITKVNLPT PKRKGGRTSR LAMKKNKSTS NNKNNNSNNI 180 IKNDIVSSSS STTTTSSTTT ATSSFHNEKV TVSTDHIINL DDKQKRQLCR CRLEKEEEEE 240 GSGGCGETVV MMLGSVSPAA ATAAAAGGSS SCDEDMLGGH DQLLLLCCX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | 25215497 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG983335 | 0.0 | HG983335.1 Humulus lupulus mRNA for Myb transcription factor (Myb8 gene), cultivar Osvald's 72, clone 4141. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015891841.1 | 7e-91 | transcription factor MYB30 | ||||
Swissprot | O22264 | 4e-77 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | A0A0D6DR76 | 1e-128 | A0A0D6DR76_HUMLU; Myb transcription factor | ||||
STRING | XP_010095299.1 | 2e-89 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 4e-71 | myb domain protein 12 |