PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0016000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family EIL
Protein Properties Length: 598aa    MW: 66076.6 Da    PI: 6.0529
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0016000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3408.39.4e-125403341286
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     eel+krmwkd+++lkrlker+k     +++a++ +k +++++qarrkkmsraQDgiLkYMlk mevcna+GfvYgi+ e+gkpv+gasd++raWW
  Spipo5G0016000  40 EELEKRMWKDRIKLKRLKERQKLV---AQQALDRSKPKHTSDQARRKKMSRAQDGILKYMLKLMEVCNARGFVYGIVLETGKPVSGASDNMRAWW 131
                     8*******************9963...45559*************************************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190
                     kekv+fd+ngpaai ky+a++   ++++++     ++ hsl+ +qD+tlgSLLs+lmqhcdppqr+fplekg +pPWWP+G+e+ww +lgl+  q
  Spipo5G0016000 132 KEKVKFDKNGPAAIEKYDAEDFTTGNAQNN----GENFHSLMGIQDATLGSLLSSLMQHCDPPQRKFPLEKGAPPPWWPSGNEEWWTNLGLPSGQ 222
                     **********************99976665....899********************************************************99 PP

                     -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.XX......XXXXXXXXXXXXX CS
            EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.ss......slrkqspkvtlsc 278
                       ppy+kphdlkk wkv+vLt v+khmsp+i++ir+++r+sk+lqdkmsa+es ++++vln+ee++++  +   s+      s++ ++++  +s+
  Spipo5G0016000 223 V-PPYRKPHDLKKIWKVGVLTGVVKHMSPNIAKIRNHVRKSKCLQDKMSARESSIWSAVLNREESLANAGKNGiSEltemrrSSSVEKRDNGASS 316
                     9.9**************************************************************998777764334322222222344444444 PP

                     XXXXXXX..........X CS
            EIN3 279 eqkedve..........g 286
                     ++++d             
  Spipo5G0016000 317 NNEYDTAgfgdaqcpmlS 334
                     445554444333333321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048739.3E-12340285No hitNo description
Gene3DG3DSA:1.10.3180.103.4E-68160289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167689.29E-60165287IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MEQLTMIANG LGDGSDFEAD DSRCANLTEN DVSDEEIDPE ELEKRMWKDR IKLKRLKERQ  60
KLVAQQALDR SKPKHTSDQA RRKKMSRAQD GILKYMLKLM EVCNARGFVY GIVLETGKPV  120
SGASDNMRAW WKEKVKFDKN GPAAIEKYDA EDFTTGNAQN NGENFHSLMG IQDATLGSLL  180
SSLMQHCDPP QRKFPLEKGA PPPWWPSGNE EWWTNLGLPS GQVPPYRKPH DLKKIWKVGV  240
LTGVVKHMSP NIAKIRNHVR KSKCLQDKMS ARESSIWSAV LNREESLANA GKNGISELTE  300
MRRSSSVEKR DNGASSNNEY DTAGFGDAQC PMLSKDDEAV EPCRASATQV SHPHENGDAA  360
DLLRNSKRKR NRPNPEFYDQ GPSQPHYENQ RGKPGVVPAI MDPVPQLERH HAAHSALPPA  420
YIISAVRPQE EGFGNHCVSP DSGLSNNANN IPAQRVHVGG QPYMYSALGN TALESGDAPG  480
FFSGSGECRL SHDKEQFPGP MFGNQLRPED AGAEGESQRA FRQPPPLEGS SNAANGDAHP  540
LVEDAFSNGQ DKLIDGHYGS PLCGLSLDYG FSNSPFSLRL DFDDFLHDEE IMEYLGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A6e-6616828912133ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797493.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_008797494.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-146EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A1D1Z8940.0A0A1D1Z894_9ARAE; ETHYLENE INSENSITIVE 3-like 3 protein
STRINGXP_008797493.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-149ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]