PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g31400.1 | ||||||||
Common Name | LOC4347439, Os09g0490200, OsJ_29834, OSNPB_090490200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | EIL | ||||||||
Protein Properties | Length: 612aa MW: 68283.7 Da PI: 5.7343 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 437.3 | 1.4e-133 | 38 | 419 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX...XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqll.edkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 e+l +rmwkd+++l+r+ker+ +l + ++a+++++k + +++qa rkkmsraQDgiLkYMlk mevcna+GfvYgiip+kgkpv+gasd++r LOC_Os09g31400.1 38 EDLARRMWKDRIKLRRIKERQDRLAlALQQAELDKSKGKPISDQAMRKKMSRAQDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGASDNIR 130 89*******************99651556666************************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT CS EIN3 93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg 185 aWWkekv+fd+ngpaai+ky+++nl+++++ s+ + +++hsl++lqD+tlgSLLs+lmqhcdppqr++ple+g++pPWWP+G+e+ww +lg LOC_Os09g31400.1 131 AWWKEKVKFDKNGPAAIAKYESENLASADAPSS---GIKSQHSLMDLQDATLGSLLSSLMQHCDPPQRKYPLERGTPPPWWPSGNEDWWIALG 220 **************************9988888...88******************************************************* PP --TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.....XXXXXXXX CS EIN3 186 lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.....slrkqspk 273 l++ q ppykkphdlkk+wkv+vLt vikhmsp++++ir+++r+sk+lqdkm+akes ++l vl++ee+++ ++ +s + ++ LOC_Os09g31400.1 221 LPRGQI-PPYKKPHDLKKVWKVGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLIWLGVLQREERLVLSIDNGMSevthhGALEYRNG 312 *****9.9****************************************************************999888554555433448899 PP XXXXXXXXXXXXXXXXXX.XXXXXXXXXX................................XXXXXXXXXXXXXXXXXXXXX......XXXXX CS EIN3 274 vtlsceqkedvegkkeskikhvqavktta................................gfpvvrkrkkkpsesakvsskevsrtcqssqf 334 t+s+++++dv+g +e ++++ +++++ g++ krk+++++ + ++ +ev q++ LOC_Os09g31400.1 313 DTHSSSNEYDVDGFEEAPLSTSSGDDEQDlspaaqlseehaptrrerakvkrpnqvvpkkaGTKEPPKRKRPRHSVTVIE-QEV----QRADD 400 99999*******8888888999999988899999999999*****************************96666666655.545....77777 PP XX.XXXXXXXXXXXXXXXX CS EIN3 335 rgsetelifadknsisqne 353 +++++++++d+n+++q e LOC_Os09g31400.1 401 ASEHSRNMIPDMNRLDQVE 419 778899*******999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 1.1E-125 | 38 | 288 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 1.4E-69 | 162 | 294 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 1.7E-60 | 168 | 291 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042762 | Biological Process | regulation of sulfur metabolic process | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MDHLAIIATE LGDSSDFEVE GIQNLTENDV SDEEIEAEDL ARRMWKDRIK LRRIKERQDR 60 LALALQQAEL DKSKGKPISD QAMRKKMSRA QDGILKYMLK LMEVCNARGF VYGIIPDKGK 120 PVSGASDNIR AWWKEKVKFD KNGPAAIAKY ESENLASADA PSSGIKSQHS LMDLQDATLG 180 SLLSSLMQHC DPPQRKYPLE RGTPPPWWPS GNEDWWIALG LPRGQIPPYK KPHDLKKVWK 240 VGVLTGVIKH MSPNFDKIRN HVRKSKCLQD KMTAKESLIW LGVLQREERL VLSIDNGMSE 300 VTHHGALEYR NGDTHSSSNE YDVDGFEEAP LSTSSGDDEQ DLSPAAQLSE EHAPTRRERA 360 KVKRPNQVVP KKAGTKEPPK RKRPRHSVTV IEQEVQRADD ASEHSRNMIP DMNRLDQVEI 420 QGMANQITSF NEEANTSEAL QHRGNTQELA HLPADFNHYG NAQATIATPV SICMRGQAVP 480 YESSDNSRPK TGNIFPQDSD SGFNNMPSSY QTIPPKQPLP LSIMEHHVVP LGIRTPADNS 540 PYSDQIIGSG NSTSVPGDMQ LIDYPFYGEQ DKFAGSSFAG LPLDYISISS PIPDIDDLLL 600 HDDDLMEYLG T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wij_A | 4e-66 | 168 | 291 | 9 | 132 | ETHYLENE-INSENSITIVE3-like 3 protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.87871 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975997 | 0.0 | ||||
Expression Atlas | A3C052 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00649 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g31400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g31400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108758 | 0.0 | AC108758.2 Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence. | |||
GenBank | AK065979 | 0.0 | AK065979.1 Oryza sativa Japonica Group cDNA clone:J013047J08, full insert sequence. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612094.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 3 protein | ||||
Refseq | XP_015612095.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 3 protein | ||||
Swissprot | O23116 | 1e-145 | EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein | ||||
TrEMBL | A3C052 | 0.0 | A3C052_ORYSJ; Os09g0490200 protein | ||||
STRING | OS09T0490200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3720 | 37 | 79 | Representative plant | OGRP563 | 16 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73730.1 | 1e-147 | ETHYLENE-INSENSITIVE3-like 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g31400.1 |
Entrez Gene | 4347439 |