PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0116800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TCP
Protein Properties Length: 362aa    MW: 37245.6 Da    PI: 7.1581
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0116800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39.3e-41681964134
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...kaaksa 94 
                      k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +ss++ s+ +        +
  Spipo4G0116800  68 SKRSSKDRHTKVDGRGRRIRMPAPCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFSsLNVSVRSSGG-STVPapaF---HS 158
                     699****************************************************************99944444444444.44443331...22 PP

             TCP  95 akskksqksaasalnlakesrakarararertrekmrikn 134
                     a    + + ++  +  ++    + +a +r+r re+ ++++
  Spipo4G0116800 159 ALAITAGAAHH--HRQQRPNYDDGDAYSRKRYREDLFNDD 196
                     21111111111..222222223444445555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-3771174IPR005333Transcription factor, TCP
PROSITE profilePS5136928.26372126IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEPAEHGGRG SHAAQRQQHE RTRGGGGAAA DAENGGDEGG EGPSQVDPSL SISSAKSGHG  60
VAALAFSSKR SSKDRHTKVD GRGRRIRMPA PCAARVFQLT RELGHKSDGE TIEWLLQQAE  120
PAIIATTGTG TIPANFSSLN VSVRSSGGST VPAPAFHSAL AITAGAAHHH RQQRPNYDDG  180
DAYSRKRYRE DLFNDDRQQD GGRAAAASSP SSGTNGGGGG AGNQLIRPSN VVPAGAMWAV  240
AAPAPANGGG AFWMLPVNAA GAGSGGPAEA STLWTSPTAG GQYGAAMPPP LQFMHRVNVQ  300
QHGAASQHHG MGMSETNLGL LAALGAYNKG EQSHALDHHQ LQQPPPPQEA ESDDEQQRSS  360
Q*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007041329.26e-81PREDICTED: transcription factor TCP8
SwissprotQ9LQF03e-57TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A3S3LVE05e-85A0A3S3LVE0_9MAGN; Transcription factor TCP8
STRINGEOX971601e-80(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-36TCP family protein