PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G35560.1 | ||||||||
Common Name | AtTCP23, F15O4.35, TCP23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 341aa MW: 35949.9 Da PI: 9.1508 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.2 | 5.9e-38 | 49 | 150 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 +++k++++++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+ + + s +ss+s+ s++ AT1G35560.1 49 TPAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANIStLNISLRSSGSTLSAPlsksfhmgra 146 789******************************************************************88888888888888777774444444433 PP TCP 89 ...k 89 + AT1G35560.1 147 aqnA 150 3320 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 26.56 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.9E-36 | 55 | 171 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP AKRPSKDRHI 60 KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANIS 120 TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE 180 EDLFKDPNFL DQEPGSRSPK PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF 240 WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL 300 FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.26325 | 0.0 | root| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30693219 | 0.0 | ||||
Genevisible | 262028_at | 0.0 | ||||
Expression Atlas | AT1G35560 | - | ||||
AtGenExpress | AT1G35560 | - | ||||
ATTED-II | AT1G35560 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00614 | PBM | 24477691 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G35560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G53230, AT1G58100, AT1G69690 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G35560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007887 | 0.0 | AC007887.9 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I, complete sequence. | |||
GenBank | AY056429 | 0.0 | AY056429.1 Arabidopsis thaliana At1g35560/F15O4_35 mRNA, complete cds. | |||
GenBank | AY081714 | 0.0 | AY081714.1 Arabidopsis thaliana At1g35560/F15O4_35 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_174789.1 | 0.0 | TCP family transcription factor | ||||
Swissprot | Q9LQF0 | 0.0 | TCP23_ARATH; Transcription factor TCP23 | ||||
TrEMBL | A0A178W532 | 0.0 | A0A178W532_ARATH; TCP23 | ||||
STRING | AT1G35560.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7053 | 24 | 41 | Representative plant | OGRP4591 | 10 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT1G35560.1 |
Entrez Gene | 840452 |
iHOP | AT1G35560 |
wikigenes | AT1G35560 |