PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G58100.1 | ||||||||
Common Name | T15M6.11, T18I24.2, TCP8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 401aa MW: 42471.4 Da PI: 6.45 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.4 | 2.4e-42 | 54 | 222 | 2 | 129 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ AT1G58100.1 54 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvplyga 151 789******************************************************************99988888888888666667778889999 PP TCP 89 ...........................kaaksaa.kskksqksaasalnlakesrakarar..arertrek 129 +++ +++ +++++q++ ++ + + sr++ r+ ++e++ k AT1G58100.1 152 lglthhqydeqggggvfaahtspllgfHHQLQHHqNQNQNQDPVETIPEGENFSRKRYRSVdlSKENDDRK 222 9999999999999****999999999855555553666666666655555666666666553322222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-41 | 59 | 220 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.411 | 60 | 114 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001047 | Molecular Function | core promoter binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST 60 KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IVAATGTGTI 120 PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH 180 QLQHHQNQNQ NQDPVETIPE GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA 240 PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG 300 GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY 360 SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS E |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.43156 | 0.0 | floral meristem| leaf| root| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145336854 | 0.0 | ||||
Genevisible | 246398_at | 0.0 | ||||
Expression Atlas | AT1G58100 | - | ||||
AtGenExpress | AT1G58100 | - | ||||
ATTED-II | AT1G58100 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G58100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G58100, AT1G69690 | |||||
IntAct | Search Q9C518 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G58100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079131 | 0.0 | AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence. | |||
GenBank | AC079604 | 0.0 | AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence. | |||
GenBank | AY081344 | 0.0 | AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds. | |||
GenBank | BT008493 | 0.0 | BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176107.1 | 0.0 | TCP family transcription factor | ||||
Swissprot | Q9C518 | 0.0 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A178WFL5 | 0.0 | A0A178WFL5_ARATH; TCP8 | ||||
STRING | AT1G58100.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10218 | 24 | 33 | Representative plant | OGRP4591 | 10 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT1G58100.1 |
Entrez Gene | 842177 |
iHOP | AT1G58100 |
wikigenes | AT1G58100 |