PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0015900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family EIL
Protein Properties Length: 634aa    MW: 69519.9 Da    PI: 5.4329
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0015900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3506.71.1e-154734501354
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     +el++rmw+d+ +lkrlke+++++   k++  +a+k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WW
  Spipo3G0015900  73 DELERRMWRDRLRLKRLKEQQQNKS--KDQ-GDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRGWW 164
                     79********************976..555.7899************************************************************ PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190
                     kekv+fdrngpaai+kyqa+n++++++++ ++   s++ +l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtG+e+ww++lg++++q
  Spipo3G0015900 165 KEKVRFDRNGPAAIAKYQADNALPGSNNETNS-DISTPRTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGNEEWWPQLGIPREQ 258
                     *************************9999988.999*********************************************************** PP

                     -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX.XXXX.XXXXXXXXXXXX CS
            EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss.slrk.qspkvtlsceqk 281
                     g+ppykkphdlkkawkvsvLtavikhmsp++++ir+l+rqsk+lqdkm+ake  ++++v++qee+++++++++  ++ sl   +s  + + + ++
  Spipo3G0015900 259 GPPPYKKPHDLKKAWKVSVLTAVIKHMSPDVNKIRKLVRQSKCLQDKMTAKENQTWSAVISQEEALARQLHPDacPQpSLGCgSSGTFSYGSTTE 353
                     *************************************************************************8733455545888999999999 PP

                     XXXXXXXXXX.XXXXXXXXXX..........................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXX CS
            EIN3 282 edvegkkeskikhvqavktta..........................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsis 350
                     +dv+g ++     +   k+ +                          g+++++kr ++p  ++  s++  + tc++ q+++++++++f dkn+++
  Spipo3G0015900 354 YDVDGFDDVTNVGMADSKAIDgglfnvgvnparekllaapplikeeaGVDFIQKRSAPPNVEQVLSQR--TFTCENGQCPHHDPRFGFVDKNARN 446
                     9999655555344545555459**********************************877777777666..69*********************** PP

                     XXXX CS
            EIN3 351 qney 354
                     +++y
  Spipo3G0015900 447 NHQY 450
                     **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.6E-13173322No hitNo description
Gene3DG3DSA:1.10.3180.104.0E-74195332IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.22E-61202326IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009873Biological Processethylene-activated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MGAVVVDDVG FPGSFEFWSL PCSASVENLQ FLSSTAPPSV TAGGGMDFGG SAEEGLPEGM  60
PEDEDSEDDI DVDELERRMW RDRLRLKRLK EQQQNKSKDQ GDAAKQRQSQ EQARRKKMSR  120
AQDGILKYML KMMEVCKAQG FVYGIIPEKG KPVSGASDNL RGWWKEKVRF DRNGPAAIAK  180
YQADNALPGS NNETNSDIST PRTLQELQDT TLGSLLSALM QHCDPPQRRF PLEKGVPPPW  240
WPTGNEEWWP QLGIPREQGP PPYKKPHDLK KAWKVSVLTA VIKHMSPDVN KIRKLVRQSK  300
CLQDKMTAKE NQTWSAVISQ EEALARQLHP DACPQPSLGC GSSGTFSYGS TTEYDVDGFD  360
DVTNVGMADS KAIDGGLFNV GVNPAREKLL AAPPLIKEEA GVDFIQKRSA PPNVEQVLSQ  420
RTFTCENGQC PHHDPRFGFV DKNARNNHQY ACQYQSSSFS QRLAGPGFHV QEDKPQAFSL  480
PLTQPKAAPA AHFMGHHGAL DISTLGIPAD GQKSISELMS FYDTNVNPSK QMGGAARAVD  540
PADDQPRIQM DAFFRQALGM GADAVFEDSG AGMPANSFLP EEIAFQPAFD NQQGAANADL  600
RFNSLGFSGM DFGGLQRMTG DSTPKLSCSN WTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-771993321134Protein ETHYLENE INSENSITIVE 3
4zds_B2e-771993321134Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:30002253}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00367DAPTransfer from AT3G20770Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:19798512}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943685.10.0protein ETHYLENE-INSENSITIVE 3-like 1a
SwissprotQ8W3M00.0EIL1B_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1b
TrEMBLA0A1D1XCK70.0A0A1D1XCK7_9ARAE; Protein ETHYLENE INSENSITIVE 3
STRINGXP_008790465.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-169ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Kuroha T, et al.
    Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.
    Science, 2018. 361(6398): p. 181-186
    [PMID:30002253]