PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0076200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 648aa    MW: 70492.6 Da    PI: 7.0434
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0076200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31260317260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgsefprsYY+Ct+a+Cp+kk +er++ d++++ei+Y+g+H+h+k
  Spipo2G0076200 260 EDGYNWRKYGQKHVKGSEFPRSYYKCTHANCPMKKMLERTH-DGQITEIIYRGQHDHPK 317
                     7***************************************9.***************85 PP
2WRKY107.18.8e-34435493159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Spipo2G0076200 435 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 493
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-27248318IPR003657WRKY domain
PROSITE profilePS5081123.319254318IPR003657WRKY domain
SuperFamilySSF1182901.96E-24256318IPR003657WRKY domain
SMARTSM007746.2E-34259317IPR003657WRKY domain
PfamPF031062.1E-24260316IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37421495IPR003657WRKY domain
SuperFamilySSF1182909.15E-30427495IPR003657WRKY domain
PROSITE profilePS5081139.054430495IPR003657WRKY domain
SMARTSM007744.1E-40435494IPR003657WRKY domain
PfamPF031061.4E-26436493IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MREHLMSELR GSVAGAAVGE PRGPGAARYK SLSPARLLIS SRAPCLTIPP GISPTTLLES  60
PVLLTNVKAE PSPTTGTFFM PLVANTVVGS KRLSSPRSIS DSIIHDERKS VSFEFEHCST  120
SGTSLSGNTE TKQSLCGKHI VQVRSNVNQK AESNDLEQFY LKGVSVEQKS ETLLQASCVD  180
QSRTCNTSYA VNSESVVATS NELTLSVAKA PIPEHGRASI TISEHVTNVP QPLKAIDNGV  240
EASINQKEHE HMTMAEKASE DGYNWRKYGQ KHVKGSEFPR SYYKCTHANC PMKKMLERTH  300
DGQITEIIYR GQHDHPKPQP NRRFAVGPVL CSQAGEKSEG FSSLTAGEAK PSNAQGQASY  360
STDPNVITEF SPVSASDGDL EVACAQPNDA VDDPADDDPE SKRRRKDGIS VDISMMGKTT  420
QPRVVVQTLS EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTNAGCPVRK HVERASHDPK  480
AVITTYEGKH NHDVPASRTS GHDTAAAASA NECTILNSQP SVSTNGSLST YGTMRVISHQ  540
YEQMEESDTI SLDLGVGLSP RCEGRPGERL QMPEFNQRQN QDQQIARPGC SSTAIQPALS  600
LPYYGDPGLG TEGFRRVEDT AESFTFKTLP LNHPSYEASV RRLLMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37260496878Probable WRKY transcription factor 4
2lex_A1e-37260496878Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905301.11e-180WRKY transcription factor SUSIBA2 isoform X1
TrEMBLA0A1U8AR491e-173A0A1U8AR49_NELNU; probable WRKY transcription factor 20
STRINGXP_010270167.11e-174(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.18e-96WRKY family protein