PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G26640.2 | ||||||||
Common Name | AtWRKY20, T15N24.90, WRKY20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 557aa MW: 61033.7 Da PI: 7.2446 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.5 | 1e-31 | 211 | 268 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d+++++i+Y+g+H+h+k AT4G26640.2 211 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 268 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.5 | 5.9e-33 | 380 | 438 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+H+h+ AT4G26640.2 380 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD 438 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.388 | 205 | 269 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-25 | 208 | 269 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.0E-27 | 209 | 269 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-34 | 210 | 268 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-24 | 211 | 267 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.8E-37 | 365 | 440 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-29 | 372 | 440 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.205 | 375 | 440 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-38 | 380 | 439 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-25 | 381 | 437 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL 60 SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS YTGRGFHQNT FTEQKSSEFE 120 FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT 180 SSDIPAGSDQ EESIQTSQND SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN 240 CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS 300 GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL 360 VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTAHG CPVRKHVERA 420 SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN 480 EHQHQNQQLV NQTHPNGVNF RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN 540 NSSYPYPPNM GRVQSGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-35 | 209 | 440 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-35 | 209 | 440 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.3375 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 253983_at | 0.0 | ||||
Expression Atlas | AT4G26640 | - | ||||
AtGenExpress | AT4G26640 | - | ||||
ATTED-II | AT4G26640 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group I | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G26640.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q93WV0 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G26640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF425837 | 0.0 | AF425837.1 Arabidopsis thaliana WRKY transcription factor 20 (WRKY20) mRNA, complete cds. | |||
GenBank | AJ630479 | 0.0 | AJ630479.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g26640D. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_849450.1 | 0.0 | WRKY family transcription factor family protein | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | Q6H942 | 0.0 | Q6H942_ARATH; At4g26640 | ||||
STRING | AT4G26640.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3133 | 28 | 67 | Representative plant | OGRP14 | 17 | 875 |
Link Out ? help Back to Top | |
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Phytozome | AT4G26640.2 |
Entrez Gene | 828771 |
iHOP | AT4G26640 |
wikigenes | AT4G26640 |